José Fernández Navarro (@jfnavarro)
github

jfnavarro

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Top repositories

1

st_pipeline

ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method in FASTQ format.
Python
50
star
2

st_analysis

A toolset for analysis and visualisation of Spatial Transcriptomics datasets.
Python
18
star
3

st_viewer

A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets
C++
11
star
4

hla_pipeline

DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions
Python
10
star
5

Mingw-TokyoCabinet

My own implemenation of tokycabinet to make it compatible with WIN32/Mingw.
C
6
star
6

Percolator-levelDB

My own implementation of leveldb to be integrated into Percolator.
C++
5
star
7

AD_POLB_ST

This repo contains the analysis scripts used in the paper Navarro et al. iScience, 2020. DOI:
R
1
star
8

PrimeTV2

A tool to visualize reconciled trees
C++
1
star
9

proteomics

A bunch of tools and scripts for processing, analysis and visualization of proteomics data (more precisely mass-spec data)
Python
1
star
10

st_ts

Software package to generated TAG based counts from Spatial Transcriptomics datasets
Python
1
star
11

scitron

Jupyter Notebook
1
star
12

Mingw-portableXDR

My adaptation of the package portableXDR to make it compatible with XDR Sun standards, therefore XDS xdr binary serialization.
Shell
1
star
13

BioInfo_ML_courses

A bunch of python scripts and tools developed for BioInformatics and Machine Learning courses
Python
1
star