jfnavarro/AD_POLB_ST

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MIT License
Created about 4 years ago
Updated about 4 years ago

jfnavarro/AD_POLB_ST

jfnavarro

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This repo contains the analysis scripts used in the paper Navarro et al. iScience, 2020. DOI:

st_pipeline

ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method in FASTQ format.

st_analysis

A toolset for analysis and visualisation of Spatial Transcriptomics datasets.

st_viewer

A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets

hla_pipeline

DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions

Mingw-TokyoCabinet

My own implemenation of tokycabinet to make it compatible with WIN32/Mingw.

Percolator-levelDB

My own implementation of leveldb to be integrated into Percolator.

PrimeTV2

A tool to visualize reconciled trees

proteomics

A bunch of tools and scripts for processing, analysis and visualization of proteomics data (more precisely mass-spec data)

st_ts

Software package to generated TAG based counts from Spatial Transcriptomics datasets

scitron

Jupyter Notebook

Mingw-portableXDR

My adaptation of the package portableXDR to make it compatible with XDR Sun standards, therefore XDS xdr binary serialization.

BioInfo_ML_courses

A bunch of python scripts and tools developed for BioInformatics and Machine Learning courses