Charlotte Soneson (@csoneson)
github

csoneson

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  • Stars
    star
    439
  • Global Rank 64,774 (Top 3 %)
  • Followers 153
  • Following 4
  • Registered about 11 years ago
  • Most used languages
    R
         80.0 %
    HTML
         10.0 %
    C++
         5.0 %
    Makefile     5.0 %

Top repositories

1

ARMOR

Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data
R
159
star
2

conquer_comparison

Code for evaluation of differential expression methods in single-cell RNA-seq data
R
103
star
3

ExploreModelMatrix

Explore design matrices interactively with R/Shiny
R
36
star
4

alevinQC

Create QC and summary reports for Alevin output
R
30
star
5

countsimQC

countsimQC - Compare characteristic features of count data sets
R
27
star
6

rna_velocity_quant

Evaluation of the effect of quantification choices on RNA velocity estimates
Makefile
26
star
7

treeclimbR

R
19
star
8

NativeRNAseqComplexTranscriptome

Code for the paper "A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes"
R
15
star
9

iCOBRA

Interactive benchmarking of ranking and assignment methods
R
14
star
10

compcodeR

HTML
10
star
11

dreval

Convenience functions to evaluate reduced dimension representations in SingleCellExperiment objects
R
7
star
12

jcc

R package to calculate junction coverage compatibility (JCC) scores
R
4
star
13

annotation_problem_txabundance

R
3
star
14

DuoClustering2018

R package with data sets and clustering results from Duรฒ et al (F1000Research 2018)
R
3
star
15

TreeHeatmap

HTML
2
star
16

TabulaMurisData

Access data from Tabula Muris Consortium via R/Bioconductor
R
2
star
17

ConfoundingExplorer

R
2
star
18

scvelor

R wrapper around the scVelo python package (https://scvelo.readthedocs.io/)
1
star
19

universe

1
star
20

iResViewer

R
1
star
21

Rhisat2

R interface to the hisat2 aligner
C++
1
star
22

BiocBuildFailureDiagnosis

R
1
star