csoneson/compcodeR

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Created over 10 years ago
Updated 5 months ago

csoneson/compcodeR

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ARMOR

Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data

conquer_comparison

Code for evaluation of differential expression methods in single-cell RNA-seq data

ExploreModelMatrix

Explore design matrices interactively with R/Shiny

alevinQC

Create QC and summary reports for Alevin output

countsimQC

countsimQC - Compare characteristic features of count data sets

rna_velocity_quant

Evaluation of the effect of quantification choices on RNA velocity estimates

treeclimbR

NativeRNAseqComplexTranscriptome

Code for the paper "A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes"

iCOBRA

Interactive benchmarking of ranking and assignment methods

dreval

Convenience functions to evaluate reduced dimension representations in SingleCellExperiment objects

jcc

R package to calculate junction coverage compatibility (JCC) scores

annotation_problem_txabundance

DuoClustering2018

R package with data sets and clustering results from Duò et al (F1000Research 2018)

TreeHeatmap

TabulaMurisData

Access data from Tabula Muris Consortium via R/Bioconductor

ConfoundingExplorer

scvelor

R wrapper around the scVelo python package (https://scvelo.readthedocs.io/)

universe

iResViewer

Rhisat2

R interface to the hisat2 aligner

BiocBuildFailureDiagnosis