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zarp
The Zavolab Automated RNA-seq Pipelinehtsinfer
Infer metadata for your downstream analysis straight from your RNA-seq datapolyAsite_workflow
Pipeline for the processing of 3' end sequencing librariesDockerfiles
Dockerfile repository of the Zavolan LabPAQR_KAPAC
scripts, pipelines and documentation to run PAQR and KAPAC; KAPAC allows to infer regulatory sequence motifs implicated in 3’ end processing changes; PAQR enables the quantification of poly(A) site usage from standard RNA-seq dataPAQR2
Updated version of PAQR, which was previously available in the PAQR_KAPAC joint repository.TECtool
TECtool uses mRNA and 3’ end sequencing data to identify novel terminal exons.RCRUNCH
Workflow for automated (e)CLIP analysis. From raw fastq to peak calling and motif analysis.MIRZAG
MIRZA-G - Pipeline and model for miRNA target predictionzarp-cli
A user-friendly command-line interface for the ZARP RNA-seq analysis workflowprogramming-for-life-sciences
Toy repository for the Programming for Life Sciences course at the Biozentrum, University of Baselmirflowz
Snakemake workflow for the mapping and quantification of miRNAs and isomiRs from miRNA-Seq libraries.SCUREL
Method to detect 3'UTR changes from scRNA-seqsnoRNAHybridSearchPipeline
A pipeline to discover snoRNA-target chimeric reads in CLIP/HTS experiments.SCINPAS
Single Cell Identification of Novel PolyA Sites.CWL_repository
Zavolan-Lab repository for CWL Tools and Workflowstandem-pas
Extract set of tandem poly(A) sites from the PolyASite atlas.srsf1_selex_Allain_lab
Notebook of SELEX data analysisscRNAsim-toolz
A repository for the tools used by scRNAsim.multiqc-plugins
Custom plugins for the MultiQC tool.zpca
PCA analysisbindz-service
tin-score-calculation
Given a set of BAM files and a gene annotation BED file, calculates the Transcript Integrity Number (TIN) for each transcript.Love Open Source and this site? Check out how you can help us