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immuneML
immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.compairr
Comparison of Adaptive Immune Receptor Repertoirestwo_step_graph_mapper
graph_peak_caller
ChIP-seq peak caller for reads mapped to a graph-based reference genomedagsim
A framework and specification language for simulating data based on graphical modelspyvg
Importing vg json graphs to Python data structures.NucBreak
Location of structural errors in a genome assembly and structural variations between a pair of genomesCausalAIRR
NucMerge
Genome assembly quality improvement assisted by alternative assemblies and paired-end Illumina readsnumpy_alignments
Simple Python module for efficient storing and comparison of mapped reads using numpyvariant_calling_benchmarks_two_step_mapper
Scripts for reproducing the variant calling benchmarks presented in the two step mapper paper.kmercount
Simple kmer counter using Bloom filter and efficient hash functionfdr_under_dependencies
StarSignDNA
crypt4gh
Crypt4GH standard implementationin1000-referanseoppgaver
Oppgaver til referanser i in1000localega-broker
bmi_python_sample_project
A baseic Python sample project, that can be used to initialize new Python projectsSynthPwr
Synthetic framework for stress testing the parameters and statistical power of epigenetic power calculatorssimilarity-measures
Code for the similarity measures articleimmuneml_tools
Galaxy tools using the immuneML conda package.track_rand
Track randomization codecompairr-benchmarking
sfb_knowledgebase
Knowledge base with links to relevant resources by the Centre for Bioinformatics, UiO.statistical_genomics_exercises
cookiecutter-python-research-project
A cookiecutter for easier continous integration in a research project based on Python codemachine_learning_in_comp_bio_exercises
These exercises are a part of the IN-BIOS5000 course at UiO, for the intro lectures on machine learning in computational biology.pharmacoepi_simulation_workshop
The material for the simulation session at the (Epi)genetics in Pharmacoepidemiology workshopLove Open Source and this site? Check out how you can help us