khroma 
Overview
Color blindness affects a large number of individuals. When communicating scientific results colour palettes must therefore be carefully chosen to be accessible to all readers.
This R package provides an implementation of Okabe and Ito (2008), Tol (2021) and Crameri (2018) colour schemes. These schemes are ready for each type of data (qualitative, diverging or sequential), with colours that are distinct for all people, including colour-blind readers. This package also provides tools to simulate colour-blindness and to test how well the colours of any palette are identifiable. To simulate colour-blindness in production-ready R figures you may also be interested in the colorblindr package.
Tol (2021) and Crameri (2018) offer carefully chosen schemes, ready for each type of data, with colours that are:
- Distinct for all people, including colour-blind readers,
- Distinct from black and white,
- Distinct on screen and paper,
- Matching well together,
- Citable and reproducible.
See vignette("tol") and vignette("crameri") for a more complete
overview.
For specific uses, several scientific thematic schemes (geologic timescale, land cover, FAO soils, etc.) are implemented, but these colour schemes may not be colour-blind safe.
All these colour schemes are implemented for use with base R graphics or ggplot2 and ggraph.
To cite khroma in publications use:
Frerebeau N (2023). _khroma: Colour Schemes for Scientific Data
Visualization_. Université Bordeaux Montaigne, Pessac, France.
doi:10.5281/zenodo.1472077 <https://doi.org/10.5281/zenodo.1472077>,
R package version 1.10.0, <https://packages.tesselle.org/khroma/>.
Une entrée BibTeX pour les utilisateurs LaTeX est
@Manual{,
author = {Nicolas Frerebeau},
title = {{khroma: Colour Schemes for Scientific Data Visualization}},
year = {2023},
organization = {Université Bordeaux Montaigne},
address = {Pessac, France},
note = {R package version 1.10.0},
doi = {10.5281/zenodo.1472077},
url = {https://packages.tesselle.org/khroma/},
}
This package is a part of the tesselle project
<https://www.tesselle.org>.
Installation
You can install the released version of khroma from CRAN:
install.packages("khroma")And the development version from GitHub with:
# install.packages("remotes")
remotes::install_github("tesselle/khroma")Usage
## Load packages
library(khroma)
## Install extra packages (if needed)
# install.packages(c("ggplot2", "spacesXYZ"))Available palettes (click to expand)
## Get a table of available palettes
info()
#> palette type max missing
#> 1 broc diverging 256 <NA>
#> 2 cork diverging 256 <NA>
#> 3 vik diverging 256 <NA>
#> 4 lisbon diverging 256 <NA>
#> 5 tofino diverging 256 <NA>
#> 6 berlin diverging 256 <NA>
#> 7 roma diverging 256 <NA>
#> 8 bam diverging 256 <NA>
#> 9 vanimo diverging 256 <NA>
#> 10 oleron diverging 256 <NA>
#> 11 bukavu diverging 256 <NA>
#> 12 fes diverging 256 <NA>
#> 13 devon sequential 256 <NA>
#> 14 lajolla sequential 256 <NA>
#> 15 bamako sequential 256 <NA>
#> 16 davos sequential 256 <NA>
#> 17 bilbao sequential 256 <NA>
#> 18 nuuk sequential 256 <NA>
#> 19 oslo sequential 256 <NA>
#> 20 grayC sequential 256 <NA>
#> 21 hawaii sequential 256 <NA>
#> 22 lapaz sequential 256 <NA>
#> 23 tokyo sequential 256 <NA>
#> 24 buda sequential 256 <NA>
#> 25 acton sequential 256 <NA>
#> 26 turku sequential 256 <NA>
#> 27 imola sequential 256 <NA>
#> 28 batlow sequential 256 <NA>
#> 29 batlowW sequential 256 <NA>
#> 30 batlowK sequential 256 <NA>
#> 31 brocO sequential 256 <NA>
#> 32 corkO sequential 256 <NA>
#> 33 vikO sequential 256 <NA>
#> 34 romaO sequential 256 <NA>
#> 35 bamO sequential 256 <NA>
#> 36 bright qualitative 7 <NA>
#> 37 highcontrast qualitative 3 <NA>
#> 38 vibrant qualitative 7 <NA>
#> 39 muted qualitative 9 #DDDDDD
#> 40 mediumcontrast qualitative 6 <NA>
#> 41 pale qualitative 6 <NA>
#> 42 dark qualitative 6 <NA>
#> 43 light qualitative 9 <NA>
#> 44 sunset diverging 11 #FFFFFF
#> 45 BuRd diverging 9 #FFEE99
#> 46 PRGn diverging 9 #FFEE99
#> 47 YlOrBr sequential 9 #888888
#> 48 iridescent sequential 23 #999999
#> 49 discreterainbow sequential 23 #777777
#> 50 smoothrainbow sequential 34 #666666
#> 51 okabeito qualitative 8 <NA>
#> 52 okabeitoblack qualitative 8 <NA>
#> 53 stratigraphy qualitative 175 <NA>
#> 54 soil qualitative 24 <NA>
#> 55 land qualitative 14 <NA>Colour palettes and scales
colour() returns a palette function that when called with a single
integer argument returns a vector of colours.
## Paul Tol's bright colour scheme
bright <- colour("bright")
bright(7)
#> blue red green yellow cyan purple grey
#> "#4477AA" "#EE6677" "#228833" "#CCBB44" "#66CCEE" "#AA3377" "#BBBBBB"
#> attr(,"missing")
#> [1] NA## Show the colour palette
plot_scheme(bright(7), colours = TRUE)
data(mpg, package = "ggplot2")
## Use with graphics
par(mar = c(5, 4, 1, 1) + 0.1)
plot(
x = mpg$displ,
y = mpg$hwy,
pch = 16,
col = colour("bright")(7)[as.factor(mpg$class)],
xlab = "displ",
ylab = "hwy",
panel.first = grid()
)
## Use with ggplot2
ggplot2::ggplot(data = mpg) +
ggplot2::aes(x = displ, y = hwy, colour = class) +
ggplot2::geom_point() +
ggplot2::theme_bw() +
scale_colour_bright()
Diagnostic tools
Test how well the colours are identifiable
## Okabe & Ito's colour scheme
okabe <- colour("okabe ito")
set.seed(12345)
plot_map(okabe(8))
## BuRd sequential colour scheme
BuRd <- colour("BuRd")
plot_tiles(BuRd(128), n = 256)
Simulate colour-blindness
plot_scheme_colourblind(okabe(8))
## ggplot2 default colour scheme
## (equally spaced hues around the colour wheel)
x <- scales::hue_pal()(8)
plot_scheme_colourblind(x)
Contributing
Please note that the khroma project is released with a Contributor Code of Conduct. By contributing to this project, you agree to abide by its terms.
References
Crameri, Fabio. 2018. “Geodynamic Diagnostics, Scientific Visualisation and StagLab 3.0.” Geoscientific Model Development 11 (6): 2541–62. https://doi.org/10.5194/gmd-11-2541-2018.
Okabe, Masataka, and Key Ito. 2008. “Color Universal Design (CUD): How to Make Figures and Presentations That Are Friendly to Colorblind People.” J*FLY. https://jfly.uni-koeln.de/color/.
Tol, Paul. 2021. “Colour Schemes.” Technical note SRON/EPS/TN/09-002 3.2. SRON. https://personal.sron.nl/~pault/data/colourschemes.pdf.