powellgenomicslab/scExplore powellgenomicslab/scExplore

  • Stars
    star
    1
  • Language
    R
  • Created over 5 years ago
  • Updated about 5 years ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
powellgenomicslab/scExplore
github

powellgenomicslab

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

R package for single-cell data visualization

More Repositories

1

Nebulosa

R package to visualize gene expression data based on weighted kernel density estimation
R
80
star
2

scPred

scPred package for cell type prediction from scRNA-seq data
R
71
star
3

DropletQC

Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data
R
31
star
4

onek1k_phase1

Contains code to analyze the OneK1K data and perform eQTL mapping of 14 cell types
R
23
star
5

ascend

Analysis of Single Cell Expression, Normalization and Differential expression
R
13
star
6

BGI_vs_Illumina_Benchmark

This repository contains code related to the publication "Comparative performance of the BGI and Illumina sequencing technology for single-cell RNA-sequencing" by Senabouth et al.
Shell
10
star
7

CROP-seq

Repository for the processing and analysis of CROP-seq data
R
5
star
8

PEER_factors

Contains analysis code to generate PEER factors from pseudo-bulk data and perform eQTL association analysis
R
4
star
9

sc-veQTL

Analysis code for sc-veQTL study
R
3
star
10

SingleCell_Prediction

This repo is for predicting cell types using gene expression features
HTML
2
star
11

Nebulosa_Rv3

Compatible package with older R versions
R
2
star
12

onek1k_dea

Characterization of transcriptional heterogeneity in OneK1K project
R
2
star
13

DropletQC_paper

Analysis code and figures for the DropletQC manuscript
R
2
star
14

CellRankJupyter

Dockerfile for Cell Rank Jupyter notebooks - includes scanpy, velocyto, scvelo and CellRank
Dockerfile
2
star
15

SingularityBaseImages

Singularity base images that will be build on singularity hub and can be used to build other images
1
star
16

iPSC_Village_scripts

scripts used to analyze the iPSC village project
R
1
star
17

Powell_lab_resources

A public GitHub repo to share resources for common computational challenges
1
star
18

OneK1K-Web-browser

HTML
1
star
19

Braque

Braque provides a collection of methods to perform pseudo-bulk analysis from single-cell data.
R
1
star
20

RPE_scRNA_AgedStudy

Public repository for code related to the generation and analysis of iPSC-derived retina pigmented epithelium cells by Lidgerwood et al.
HTML
1
star