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Nebulosa
R package to visualize gene expression data based on weighted kernel density estimationscPred
scPred package for cell type prediction from scRNA-seq dataDropletQC
Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq dataonek1k_phase1
Contains code to analyze the OneK1K data and perform eQTL mapping of 14 cell typesascend
Analysis of Single Cell Expression, Normalization and Differential expressionBGI_vs_Illumina_Benchmark
This repository contains code related to the publication "Comparative performance of the BGI and Illumina sequencing technology for single-cell RNA-sequencing" by Senabouth et al.CROP-seq
Repository for the processing and analysis of CROP-seq dataPEER_factors
Contains analysis code to generate PEER factors from pseudo-bulk data and perform eQTL association analysissc-veQTL
Analysis code for sc-veQTL studySingleCell_Prediction
This repo is for predicting cell types using gene expression featuresNebulosa_Rv3
Compatible package with older R versionsonek1k_dea
Characterization of transcriptional heterogeneity in OneK1K projectDropletQC_paper
Analysis code and figures for the DropletQC manuscriptSingularityBaseImages
Singularity base images that will be build on singularity hub and can be used to build other imagesiPSC_Village_scripts
scripts used to analyze the iPSC village projectPowell_lab_resources
A public GitHub repo to share resources for common computational challengesscExplore
R package for single-cell data visualizationOneK1K-Web-browser
Braque
Braque provides a collection of methods to perform pseudo-bulk analysis from single-cell data.RPE_scRNA_AgedStudy
Public repository for code related to the generation and analysis of iPSC-derived retina pigmented epithelium cells by Lidgerwood et al.Love Open Source and this site? Check out how you can help us