philgooch/coronavirus-preprint-research-funders

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Created over 4 years ago
Updated over 4 years ago

philgooch/coronavirus-preprint-research-funders

philgooch

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Funding metadata for medRxiv and bioRxiv preprints on COVID-19

abbreviation-extraction

Python3 implementation of the Schwartz-Hearst algorithm for extracting abbreviation-definition pairs

neo4j-nlp

Sandbox for playing with Neo4J and graph approaches to NLP

Jupyter Notebook

BADREX-Biomedical-Abbreviation-Expander

GATE plugin to expand, annotate and coreference biomedical abbreviations and acronyms

dimensions-coronavirus-publications

Processed output from Digital Science Dimensions list of DOIs for COVID-19 related papers

medrxiv-coronavirus-preprints

medRxiv coronavirus PDF preprints converted to JSON data

ClinicalMeasurements

GATE resource for annotating quantitative and temporal concepts in clinical notes

WordNet_Suggester

GATE plugin for adding WordNet features to annotations

Pronoun_Annotator

GATE Plugin for extended pronominal coreference

BioPred--Biomedical-Predicate-VerbGroup-Chunker

Predicate phrase chunker for biomedical texts

AnatomyDiseaseProcedureFinderPR

GATE plugin that uses neoclassical-type morphemes and key words to identify potential anatomical, disease and clinical procedure mentions in the text

MiniChemDrugTagger

GATE plugin to identify chemical term and drug term mentions

score-enrichments

Code repo for experiments related to the SCORE dataset

ClauseSplitter

Splits English sentences into clauses

philgooch.github.io

Hyperlinked Chilcot HTML pages

GSpell_Corrector

GATE plugin that wraps the GSpell API, from the National Library of Medicine Lexical Systems Group, to add spelling suggestions to features in the input/output annotations defined.

BaselineCoreference

The Baseline Coreference PR provides a flexible framework for coreference of previously annotated texts. The PR creates in-document coreference chains between successive antecedent-anaphor pairs.