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NGSCheckMate
Software program for checking sample matching for NGS databamsnap
xTea
Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technicsnozzle
Nozzle is a report generation toolkit for data analysis pipelines implemented in R.ShatterSeek
SigMA
Mutational signature analysis for low statistics SNV dataMosaicForecast
A mosaic detecting software based on phasing and random forestHiNT
HiC for copy Number variation and Translocation detectionMuSiCal
A comprehensive toolkit for mutational signature analysisMSIprofiler
Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing dataLiRA
SCAN2
SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)PaSDqc
A python library for single cell whole-genome sequencing quality evaluationscan-snv
Single cell somatic genotyperemsar
EMSAR quantifies transcripts from RNA-seq data (Citation : Lee et al., BMC Bioinformatics 2015, 16:278, http://www.biomedcentral.com/1471-2105/16/278)Salamander
Salamander is a non-negative matrix factorization framework for signature analysisHiTea
computational tool to identify trasposable element insertions using Hi-C datafocal-amplification
SCAN2_PTA_paper_2022
Scripts for replicating the analyses in Luquette et al. 2022xTea_paper
Host the scripts, running commands, and results for the xTea paper.r-scansnv
R package for SCAN-SNVcomparative-website
Comparative modENCODE/ENCODE website.mutagenesis_tools
Scripts for simulating mutant peptides and reading frames from mutationsLove Open Source and this site? Check out how you can help us