okadalabipr/cancer_modeling

Stars
2
Language
Python
License
MIT License
Created over 5 years ago
Updated over 4 years ago

okadalabipr/cancer_modeling

okadalabipr

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Modeling signaling networks in cancer

intro_to_param_estim

Parameter estimation of ODE models describing biological processes

ccle_extractor

Python script for extracting dataset from CCLE (Cancer Cell Line Encyclopedia)

Wibisana2021

Imaging and single cell sequencing analyses of super-enhancer activation mediated by NF-κB in B cells (Wibisana, JN et al., 2021)

py2jl

Converting Python code to Julia for ODE model construction

Michida2020

Michida, H. et al. The number of transcription factors at an enhancer determines switch-like gene expression.

Birtwistle2007

Birtwistle, M. R. et al. Ligand-dependent responses of the ErbB signaling network: Experimental and modeling analyses. Mol. Syst. Biol. 3, (2007).