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fmriprep
fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.mriqc
Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brainsmriprep
Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)niworkflows
Common workflows for MRI (anatomical, functional, diffusion, etc)dmriprep
dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.sdcflows
Susceptibility Distortion Correction (SDC) workflows for EPI MR schemesnibabies
fMRIPrep-Infants - A robust, transparent workflow tailored for neonate and infant MRIfmriprep-notebooks
A repository for notebooks associated with FMRIPREPeddymotion
Open-source eddy-current and head-motion correction for dMRI.fmriprep-rodents
fMRIPrep for Rodentsnirodents
qc-book
ISMRM '22 QC Tutorialsops-cookiecutter
Template repo for bootstrapping and maintaining SOPs (Standard operation procedures)nipreps-book
dmriprep-viewer
Interactive dmriprep report HTML, JS & CSSnireports
The NiPreps' Reporting and Visualization system - report templates and "reportlets"fmripost-aroma
Run ICA-AROMA on fMRIPrep derivativesmriqcwebapi
nondefaced-detector
Identify non-defaced datasets before publicationmriqc-learn
Learning on MRIQC-generated image quality metrics (IQMs).fmriprep_stats
Automatic reports summarizing usage stats from Sentry.ioqkay
Manager for the quality assessment of large neuroimaging studiesmriqc-notebooks
A repository associated to MRIQC containing notebooks and other resourcessynthstrip
Synthstrip integration to be used across niprepsmigas-server
nipreps.github.io
The NiPreps landing pageTM-meetings
petqc
PETQC: image quality metrics for quality assessment of PET datamigas-py
A ready-to-go python package for communicating with a migas serverpetprep
PETPrep: A Robust Preprocessing Pipeline for PET Dataversion-schemes
setuptools_scm plugin for nipreps version schemes.github
Shared community health filesGOVERNANCE
The NiPreps Community's Governance Documentsfmripost-phase
An attempt at an fMRIPost workflow for handling phase datafreesurfer
Partial docker images for multi-staged buildsmriqcwebapi-schemas
Schemas for the MRIQC WebAPIdocker-images
Dockerfiles to build images for multi-stage buildsfsl
Partial docker images for multi-staged buildsfmripost-rapidtide
A BIDS App for running rapidtide on a preprocessed fMRI dataset.afni
mriqc-report-hub
A web service to run QC on datasets with MRIQC individual reportsresampler
Single-shot resampling utility for nipreps derivativesnipreps
The official NiPreps Python moduleLove Open Source and this site? Check out how you can help us