There are no reviews yet. Be the first to send feedback to the community and the maintainers!
fmriprep
fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.mriqc
Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brainsmriprep
Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)niworkflows
Common workflows for MRI (anatomical, functional, diffusion, etc)dmriprep
dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.sdcflows
Susceptibility Distortion Correction (SDC) workflows for EPI MR schemesnibabies
fMRIPrep-Infants - A robust, transparent workflow tailored for neonate and infant MRIfmriprep-notebooks
A repository for notebooks associated with FMRIPREPeddymotion
Open-source eddy-current and head-motion correction for dMRI.fmriprep-rodents
fMRIPrep for Rodentsnirodents
qc-book
ISMRM '22 QC Tutorialsops-cookiecutter
Template repo for bootstrapping and maintaining SOPs (Standard operation procedures)nipreps-book
dmriprep-viewer
Interactive dmriprep report HTML, JS & CSSnireports
The NiPreps' Reporting and Visualization system - report templates and "reportlets"nondefaced-detector
Identify non-defaced datasets before publicationfmripost-aroma
Run ICA-AROMA on fMRIPrep derivativesmriqcwebapi
fmriprep_stats
Automatic reports summarizing usage stats from Sentry.ioqkay
Manager for the quality assessment of large neuroimaging studiesmriqc-learn
Learning on MRIQC-generated image quality metrics (IQMs).mriqc-notebooks
A repository associated to MRIQC containing notebooks and other resourcesmigas-server
TM-meetings
petqc
PETQC: image quality metrics for quality assessment of PET datamigas-py
A ready-to-go python package for communicating with a migas serverpetprep
PETPrep: A Robust Preprocessing Pipeline for PET Data.github
Shared community health filesGOVERNANCE
The NiPreps Community's Governance Documentsnipreps.github.io
The NiPreps landing pagegeneralizable-brain-extraction
Generalizing antsBrainExtraction across populations and speciesfreesurfer
Partial docker images for multi-staged buildsmriqcwebapi-schemas
Schemas for the MRIQC WebAPIdocker-images
Dockerfiles to build images for multi-stage buildsfsl
Partial docker images for multi-staged buildsfmripost-rapidtide
A BIDS App for running rapidtide on a preprocessed fMRI dataset.afni
mriqc-report-hub
A web service to run QC on datasets with MRIQC individual reportsresampler
Single-shot resampling utility for nipreps derivativessynthstrip
Synthstrip integration to be used across niprepsLove Open Source and this site? Check out how you can help us