nipreps/synthstrip

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Language
Python
License
Apache License 2.0
Created over 1 year ago
Updated about 1 year ago

nipreps/synthstrip

nipreps

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Synthstrip integration to be used across nipreps

fmriprep

fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

mriqc

Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain

smriprep

Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)

niworkflows

Common workflows for MRI (anatomical, functional, diffusion, etc)

dmriprep

dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

sdcflows

Susceptibility Distortion Correction (SDC) workflows for EPI MR schemes

nibabies

fMRIPrep-Infants - A robust, transparent workflow tailored for neonate and infant MRI

fmriprep-notebooks

A repository for notebooks associated with FMRIPREP

Jupyter Notebook

eddymotion

Open-source eddy-current and head-motion correction for dMRI.

fmriprep-rodents

fMRIPrep for Rodents

nirodents

qc-book

ISMRM '22 QC Tutorial

sops-cookiecutter

Template repo for bootstrapping and maintaining SOPs (Standard operation procedures)

nipreps-book

dmriprep-viewer

Interactive dmriprep report HTML, JS & CSS

nireports

The NiPreps' Reporting and Visualization system - report templates and "reportlets"

nondefaced-detector

Identify non-defaced datasets before publication

fmripost-aroma

Run ICA-AROMA on fMRIPrep derivatives

mriqcwebapi

fmriprep_stats

Automatic reports summarizing usage stats from Sentry.io

Jupyter Notebook

qkay

Manager for the quality assessment of large neuroimaging studies

mriqc-learn

Learning on MRIQC-generated image quality metrics (IQMs).

mriqc-notebooks

A repository associated to MRIQC containing notebooks and other resources

Jupyter Notebook

migas-server

TM-meetings

petqc

PETQC: image quality metrics for quality assessment of PET data

migas-py

A ready-to-go python package for communicating with a migas server

petprep

PETPrep: A Robust Preprocessing Pipeline for PET Data

version-schemes

setuptools_scm plugin for nipreps version schemes

.github

Shared community health files

GOVERNANCE

The NiPreps Community's Governance Documents

nipreps.github.io

The NiPreps landing page

generalizable-brain-extraction

Generalizing antsBrainExtraction across populations and species

freesurfer

Partial docker images for multi-staged builds

mriqcwebapi-schemas

Schemas for the MRIQC WebAPI

docker-images

Dockerfiles to build images for multi-stage builds

fsl

Partial docker images for multi-staged builds

fmripost-rapidtide

A BIDS App for running rapidtide on a preprocessed fMRI dataset.

afni

mriqc-report-hub

A web service to run QC on datasets with MRIQC individual reports

resampler

Single-shot resampling utility for nipreps derivatives