mgalardini/reads2snps

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Created over 9 years ago
Updated almost 9 years ago

mgalardini/reads2snps

mgalardini

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From second generation sequencing reads to variant calls

pyseer

SEER, reimplemented in python 🐍🔮

python_plotting_snippets

Tips and tricks for plotting in python

Jupyter Notebook

pdb2uniprot

Convert PDB residues to their Uniprot equivalents

nuncha

Music with a Wii nunchuck 🎮🎶

chembl_tools

Small scripts to make the most of the ChEMBL API

2017_python_course

Intermediate python programming course 🐍🏫

Jupyter Notebook

GalAuduino

Yet another implementation of Auduino (Arduino synth)

abstractFFT

"Abstract" paintings using Fourier transform tricks 🎨🖥️

2016_python_course

Material for the EBI predocs course on python

Jupyter Notebook

pangenome_variation

Run several analysis on bacterial genomes

2018_ecoli_pathogenicity

Highlight genetic determinants of E. coli's pathogenicity

reads2genome

From second generation sequencing reads to annotated bacterial genome

reads2transcriptome

From second generation sequencing reads to base counts

align_upstreams

Align and study transcription factor binding sites

jupyter_example_pipeline

Simple example on how you can automate reproducible analyses using jupyter notebooks

Jupyter Notebook

bacteria2go

Quick and dirty script to download and analyse bacterial genomes from NCBI

DemonicDevice

A cool add-on to your cthulhu role-playing game!

BlitzQuotes

Simple Android application that shows a random quote from the Blitz! crew

ecopredict

Code for growth phenotypes prediction in E. coli and manuscript figures generation

Jupyter Notebook