mgalardini/ecopredict

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Created about 8 years ago
Updated over 4 years ago

mgalardini/ecopredict

mgalardini

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Code for growth phenotypes prediction in E. coli and manuscript figures generation

pyseer

SEER, reimplemented in python 🐍🔮

python_plotting_snippets

Tips and tricks for plotting in python

Jupyter Notebook

pdb2uniprot

Convert PDB residues to their Uniprot equivalents

nuncha

Music with a Wii nunchuck 🎮🎶

chembl_tools

Small scripts to make the most of the ChEMBL API

2017_python_course

Intermediate python programming course 🐍🏫

Jupyter Notebook

GalAuduino

Yet another implementation of Auduino (Arduino synth)

abstractFFT

"Abstract" paintings using Fourier transform tricks 🎨🖥️

2016_python_course

Material for the EBI predocs course on python

Jupyter Notebook

pangenome_variation

Run several analysis on bacterial genomes

2018_ecoli_pathogenicity

Highlight genetic determinants of E. coli's pathogenicity

reads2genome

From second generation sequencing reads to annotated bacterial genome

reads2snps

From second generation sequencing reads to variant calls

reads2transcriptome

From second generation sequencing reads to base counts

align_upstreams

Align and study transcription factor binding sites

jupyter_example_pipeline

Simple example on how you can automate reproducible analyses using jupyter notebooks

Jupyter Notebook

bacteria2go

Quick and dirty script to download and analyse bacterial genomes from NCBI

DemonicDevice

A cool add-on to your cthulhu role-playing game!

BlitzQuotes

Simple Android application that shows a random quote from the Blitz! crew