klmr/example-r-analysis

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R
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Created over 8 years ago
Updated over 3 years ago

klmr/example-r-analysis

klmr

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An example for an R analysis workflow using a Makefile, shell scripts and Knitr

box

Write reusable, composable and modular R code

named-operator

Named operators for C++

cpp11-range

Range-based for loops to iterate over a range of numbers or values

thesis

My PhD thesis, “Investigating the link between tRNA and mRNA abundance in mammals”

lisp.cpp

Minimal Lisp implementation in C++, inspired by “lispy”

decorator

R function decorators

multifunction

A multicast function type for C++

minimappr

Code minimaps for R

hyperlight

Automatically exported from code.google.com/p/hyperlight

fun

Module for functional programming in R

sys

Easily create reusable command line scripts with R

trna

tRNA gene regulation downstream analysis

cv

unpack

Vector unpack assignment syntax for R

math-art

streampunk

Compiler for a pipe-based stream language to construct complex pipelines

knitr-example

An example of a genomics analysis using knitr

rcane

Miscellaneous R tools that I haven’t had time yet to properly integrate. (deprecated and unmaintained)

modules

An alternative module system for R

parser-combinators

Parser combinators in R

system-setup

Bootstrap a usable system configuration for OS X

vim-snakemake

Snakemake Vim definitions, copied from https://bitbucket.org/snakemake/snakemake/

.files

My dotfiles repository

klmr.github.io

switch-r

R version switcher for macOS

cpp11-raw-ptr

A raw pointer type for C++11

te

Map, quantify and analyse transposable element expression

ggplots

Some (different, better) defaults for ggplot2

trna-chip-pipeline

Upstream ChIP-seq analysis pipeline for tRNA data

rnaseq-norm

Presentation slides about RNA-seq normalisation methods

pichip

codons

Analysis of adaptation of translation efficiency by means of codon–anticodon selection

bog-2015-poster

Biology of Genomes 2015 poster

aka

roxydoxy

r-dict

poly-u

royal-jelly