khanlab/labelmerge khanlab/labelmerge

  • Stars
    star
    3
  • Rank 3,963,521 (Top 79 %)
  • Language
    Python
  • Created about 2 years ago
  • Updated 8 months ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
khanlab/labelmerge
github

khanlab

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Merge label maps

More Repositories

1

hippunfold

BIDS App for Hippunfold (automated hippocampal unfolding and subfield segmentation)
Python
47
star
2

snakebids

Snakemake + BIDS
Python
17
star
3

tar2bids

Python
7
star
4

autobids

Automated Dicom to BIDS and pipelines using compute canada
Shell
5
star
5

bids-tutorial

Tutorial on BIDS - Methods Lunch Feb 12
5
star
6

neuroglia-helpers

Helper and wrapper scripts for using Singularity locally and on compute canada
Shell
5
star
7

scattr

BIDS app for structural connectivity between targeted regions
Python
4
star
8

mp2rage_genUniDen

Generates UNI-DEN image from UNI, Inv1 and Inv2 images
MATLAB
3
star
9

mp2rage_correction

BIDS App for correction of residual B1 in MP2RAGE based on Sa2RAGE (code from JP Marques)
MATLAB
3
star
10

khanlab.github.io

Khan Lab website
HTML
2
star
11

cfmm2tar

Tools for dicom-server retrieval, tarballing and conversion to bids
Python
2
star
12

niftynet_hackathon

2
star
13

histmri

Scripts and pipelines for histology-MRI registration and histology processing
MATLAB
2
star
14

prepdwi

BIDS-app for pre-processing DWI (denoise, unring, top-up, eddy, bedpost.. )
MATLAB
2
star
15

funcmasker-flex

BIDS App for U-net brain masking of fetal bold MRI
Jupyter Notebook
2
star
16

cc-slurm

This profile configures Snakemake to run on Compute Canada with SLURM (e.g. graham).
Python
2
star
17

gradcorrect

BIDS app for correcting gradient non-linearities, saves corrected images as mirrored BIDS dataset, along with warp and intensity-correction fields
Shell
2
star
18

SPIMprep

A Snakemake workflow for pre-processing single plane illumination microscopy (SPIM, aka lightsheet microscopy)
Python
2
star
19

hippunfold-templateflow

Hippunfold outputs on templateflow templates
1
star
20

prepT2space

preprocessing for 7T 3D T2 SPACE data
Shell
1
star
21

dcmtk_pacs

Dockerfile
1
star
22

SPIMquant

SnakeBIDS app for quantiative analysis of SPIM (lightsheet) brain data
Jupyter Notebook
1
star
23

zarrnii

Package for working with OME-Zarr and NIFTI images in a unified manner, with a focus on spatial transformations
Jupyter Notebook
1
star
24

gcnn_dmri

Python
1
star