khanlab/mp2rage_correction khanlab/mp2rage_correction

  • Stars
    star
    3
  • Rank 3,963,521 (Top 79 %)
  • Language
    MATLAB
  • Created almost 7 years ago
  • Updated over 2 years ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
khanlab/mp2rage_correction
github

khanlab

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

BIDS App for correction of residual B1 in MP2RAGE based on Sa2RAGE (code from JP Marques)

More Repositories

1

hippunfold

BIDS App for Hippunfold (automated hippocampal unfolding and subfield segmentation)
Python
47
star
2

snakebids

Snakemake + BIDS
Python
17
star
3

tar2bids

Python
7
star
4

autobids

Automated Dicom to BIDS and pipelines using compute canada
Shell
5
star
5

bids-tutorial

Tutorial on BIDS - Methods Lunch Feb 12
5
star
6

neuroglia-helpers

Helper and wrapper scripts for using Singularity locally and on compute canada
Shell
5
star
7

scattr

BIDS app for structural connectivity between targeted regions
Python
4
star
8

labelmerge

Merge label maps
Python
3
star
9

mp2rage_genUniDen

Generates UNI-DEN image from UNI, Inv1 and Inv2 images
MATLAB
3
star
10

khanlab.github.io

Khan Lab website
HTML
2
star
11

cfmm2tar

Tools for dicom-server retrieval, tarballing and conversion to bids
Python
2
star
12

niftynet_hackathon

2
star
13

histmri

Scripts and pipelines for histology-MRI registration and histology processing
MATLAB
2
star
14

prepdwi

BIDS-app for pre-processing DWI (denoise, unring, top-up, eddy, bedpost.. )
MATLAB
2
star
15

funcmasker-flex

BIDS App for U-net brain masking of fetal bold MRI
Jupyter Notebook
2
star
16

cc-slurm

This profile configures Snakemake to run on Compute Canada with SLURM (e.g. graham).
Python
2
star
17

gradcorrect

BIDS app for correcting gradient non-linearities, saves corrected images as mirrored BIDS dataset, along with warp and intensity-correction fields
Shell
2
star
18

SPIMprep

A Snakemake workflow for pre-processing single plane illumination microscopy (SPIM, aka lightsheet microscopy)
Python
2
star
19

hippunfold-templateflow

Hippunfold outputs on templateflow templates
1
star
20

prepT2space

preprocessing for 7T 3D T2 SPACE data
Shell
1
star
21

dcmtk_pacs

Dockerfile
1
star
22

SPIMquant

SnakeBIDS app for quantiative analysis of SPIM (lightsheet) brain data
Jupyter Notebook
1
star
23

zarrnii

Package for working with OME-Zarr and NIFTI images in a unified manner, with a focus on spatial transformations
Jupyter Notebook
1
star
24

gcnn_dmri

Python
1
star