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CryoTransformer
A transformer model for picking protein particles in cryo-EM imagesGenomeFlow
GenomeFlow: A Graphical Tool for Modeling and Analyzing 3D Genome StructureDeepGRN
Deep learning for modeling gene regulatory networkTransFun
Transformer for protein function predictionDRLComplex
Deep reinforcement learning for protein complex modelingCATA
Collaborative Attentive-Autoencoder for scientific article recommendationCryoSegNet
Customized foundational image segmentation models for picking protein particles in cryo-EM imagesDProQA
GNET2
Gene regulatory network modeling tool (GNET2)DeepComplex
Deep learning prediction of inter-chain contacts of protein complexDeepGraphene
Deep learning for predicting the properties of grapheneCryo2Struct
Deep learning tools for converting cryo-EM density maps to protein structuresPRO3DCNN
3D Convolutional Neural Networks for Classifying Protein Structures into FoldsDRCon
Deep dilated convolutional residual neural network for predicting interchain contacts of protein homodimersMULTICOM_Human_CASP14
MULTICOM human system for CASP14 tertiary structure predictionAutoCryoPicker
An Unsupervised Learning Approach for Fully Automated Single Particle Picking in Cryo-EM ImagesDeepComplex2
Deep learning prediction of protein complex structures from sequencesInterpretContactMap
Deep learning methods for interpreting protein contact mapsDISTEMA
Prediction of the quality of single protein model using deep learning and residue-residue distance mapsDeepProLigand
A deep learning bioinformatics pipeline for protein-ligand complex structure predictionSAXSDom
This is a bioinformatics tool to use SAXS data to assemble protein domain structures into full-length structural modelsDistDom
Deep learning prediction of protein domains from distance mapsSuperCryoPicker
A Super Clustering Approach for Single Particle Picking in cryo-EM ImagesDNCON2_Inter
Predicting inter-protein contacts using DNCON2DeepCryoMap
The software package to align cryo-EM particles to create 3D density maps of proteinsDeepCryoEM
Deep learning methods for CryoEM data analysisCryoEMSeq
The program of mapping protein sequences into protein Ca trace derived from cryoEM image dataBML_FAQ
This repository contains the frequently asked questions, their answers and the description of resources in the Bioinformatics and Machine Learning Lab (BML).DFOLD
The distance-based protein foldingDNCON4_system
The DNCON4 system for training deep learning for protein contact prediction and making predictionsGANSS
Generative Adversarial Network for Protein Secondary Structure PredictionLove Open Source and this site? Check out how you can help us