Jianlin Cheng (@jianlin-cheng)
github

jianlin-cheng

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Top repositories

1

CryoTransformer

A transformer model for picking protein particles in cryo-EM images
Python
32
star
2

GenomeFlow

GenomeFlow: A Graphical Tool for Modeling and Analyzing 3D Genome Structure
Java
21
star
3

DeepGRN

Deep learning for modeling gene regulatory network
Python
20
star
4

TransFun

Transformer for protein function prediction
Python
20
star
5

DRLComplex

Deep reinforcement learning for protein complex modeling
Python
11
star
6

CATA

Collaborative Attentive-Autoencoder for scientific article recommendation
Python
11
star
7

CryoSegNet

Customized foundational image segmentation models for picking protein particles in cryo-EM images
Python
9
star
8

PreMut

Accurate prediction of single-site mutation induced changes on protein structures with equivariant graph neural networks
Python
7
star
9

DProQA

Python
7
star
10

GNET2

Gene regulatory network modeling tool (GNET2)
R
7
star
11

DeepComplex

Deep learning prediction of inter-chain contacts of protein complex
JavaScript
7
star
12

DeepGraphene

Deep learning for predicting the properties of graphene
5
star
13

Cryo2Struct

Deep learning tools for converting cryo-EM density maps to protein structures
Python
5
star
14

PRO3DCNN

3D Convolutional Neural Networks for Classifying Protein Structures into Folds
TeX
4
star
15

DRCon

Deep dilated convolutional residual neural network for predicting interchain contacts of protein homodimers
Python
4
star
16

MULTICOM_Human_CASP14

MULTICOM human system for CASP14 tertiary structure prediction
C
3
star
17

AutoCryoPicker

An Unsupervised Learning Approach for Fully Automated Single Particle Picking in Cryo-EM Images
MATLAB
3
star
18

DeepComplex2

Deep learning prediction of protein complex structures from sequences
Python
3
star
19

InterpretContactMap

Deep learning methods for interpreting protein contact maps
Python
3
star
20

DISTEMA

Prediction of the quality of single protein model using deep learning and residue-residue distance maps
Python
3
star
21

DeepProLigand

A deep learning bioinformatics pipeline for protein-ligand complex structure prediction
Python
3
star
22

SAXSDom

This is a bioinformatics tool to use SAXS data to assemble protein domain structures into full-length structural models
C
2
star
23

DistDom

Deep learning prediction of protein domains from distance maps
Python
2
star
24

SuperCryoPicker

A Super Clustering Approach for Single Particle Picking in cryo-EM Images
MATLAB
2
star
25

DNCON2_Inter

Predicting inter-protein contacts using DNCON2
Python
2
star
26

DeepCryoMap

The software package to align cryo-EM particles to create 3D density maps of proteins
MATLAB
2
star
27

DeepCryoEM

Deep learning methods for CryoEM data analysis
MATLAB
2
star
28

CryoEMSeq

The program of mapping protein sequences into protein Ca trace derived from cryoEM image data
Perl
1
star
29

BML_FAQ

This repository contains the frequently asked questions, their answers and the description of resources in the Bioinformatics and Machine Learning Lab (BML).
1
star
30

DFOLD

The distance-based protein folding
Perl
1
star
31

DNCON4_system

The DNCON4 system for training deep learning for protein contact prediction and making predictions
Python
1
star
32

GANSS

Generative Adversarial Network for Protein Secondary Structure Prediction
Perl
1
star