jianlin-cheng/TransFun

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Language
Python
Created about 3 years ago
Updated 2 months ago

jianlin-cheng/TransFun

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Transformer for protein function prediction

CryoTransformer

A transformer model for picking protein particles in cryo-EM images

GenomeFlow

GenomeFlow: A Graphical Tool for Modeling and Analyzing 3D Genome Structure

DeepGRN

Deep learning for modeling gene regulatory network

DRLComplex

Deep reinforcement learning for protein complex modeling

CATA

Collaborative Attentive-Autoencoder for scientific article recommendation

CryoSegNet

Customized foundational image segmentation models for picking protein particles in cryo-EM images

PreMut

Accurate prediction of single-site mutation induced changes on protein structures with equivariant graph neural networks

DProQA

GNET2

Gene regulatory network modeling tool (GNET2)

DeepComplex

Deep learning prediction of inter-chain contacts of protein complex

DeepGraphene

Deep learning for predicting the properties of graphene

Cryo2Struct

Deep learning tools for converting cryo-EM density maps to protein structures

PRO3DCNN

3D Convolutional Neural Networks for Classifying Protein Structures into Folds

DRCon

Deep dilated convolutional residual neural network for predicting interchain contacts of protein homodimers

MULTICOM_Human_CASP14

MULTICOM human system for CASP14 tertiary structure prediction

AutoCryoPicker

An Unsupervised Learning Approach for Fully Automated Single Particle Picking in Cryo-EM Images

DeepComplex2

Deep learning prediction of protein complex structures from sequences

InterpretContactMap

Deep learning methods for interpreting protein contact maps

DISTEMA

Prediction of the quality of single protein model using deep learning and residue-residue distance maps

DeepProLigand

A deep learning bioinformatics pipeline for protein-ligand complex structure prediction

SAXSDom

This is a bioinformatics tool to use SAXS data to assemble protein domain structures into full-length structural models

DistDom

Deep learning prediction of protein domains from distance maps

SuperCryoPicker

A Super Clustering Approach for Single Particle Picking in cryo-EM Images

DNCON2_Inter

Predicting inter-protein contacts using DNCON2

DeepCryoMap

The software package to align cryo-EM particles to create 3D density maps of proteins

DeepCryoEM

Deep learning methods for CryoEM data analysis

CryoEMSeq

The program of mapping protein sequences into protein Ca trace derived from cryoEM image data

BML_FAQ

This repository contains the frequently asked questions, their answers and the description of resources in the Bioinformatics and Machine Learning Lab (BML).

DFOLD

The distance-based protein folding

DNCON4_system

The DNCON4 system for training deep learning for protein contact prediction and making predictions

GANSS

Generative Adversarial Network for Protein Secondary Structure Prediction