hyphaltip/CSHL_NGS

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Created over 11 years ago
Updated over 9 years ago

hyphaltip/CSHL_NGS

hyphaltip

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NGS DNA analysis for the CSHL 2012 Programming for Biology course

genome-scripts

Genome Scripts used in fungal comparative genomics

htbda_perl_class

High Throughput Biological Data Analysis using Perl

mTEA

Mosquito TE Annotation

subopt-kaks

Suboptimal alignments and Ka, Ks calculations

fungi-gene-prediction-params

Provide trained gene prediction parameters for Fungal genome annotation

Tutorial_GenomeEvolution

Genome Evolution Lecture for Phylogenomics Workshop

fungaltools

Misc scripts for fungal tools, mostly for use in papers

short-read-db

Database for shortreads and comparing overlap with genomic features

cndtools

fork of cndtools

pubmed_to_COA

Write a Collaborating Authors table suitable for USDA/NSF COA/COI files

otu_cluster

Cluster OTUs based on % similarity, mostly scripts to pipeline into other tools

gbrowse_conf_fungalgenomes

Supporting fungalgenomes.org website

mobedac-fungi

MOBeDAC Fungi Database

pan-fungal-project

A Pan-Fungal Genomes Database

thesis

Perl Code from my Thesis (2006)

ucr-biocluster-scripts

UCR Biocluster job scripts

macports

My local macports files

hyphaltip.github.io

GitHub home for hyphaltip

GEN220_2015

GEN220 course, Fall 2015 edition

H3K27

H3K27 neurospora project

TEamRice

Rice TE project

uniprot_tools

Some tools manipulating uniprot/sprot related data

rhizobia-genomics

Scripts to support bacterial genomics project

neolecta

neolecta annotation and analysis