Discover @hyphaltip Open Source projects

Jason Stajich (@hyphaltip)

hyphaltip

Stars
162
Global Rank 145,062 (Top 5 %)
Followers 229
Following 78
Registered almost 16 years ago
Most used languages

Perl
56.5 %

Python
8.7 %

R
8.7 %

C++
4.3 %

C
4.3 %

JavaScript
4.3 %

CSS
4.3 %

Shell
4.3 %

AMPL 4.3 %
Location 🇺🇸 United States
Country Total Rank 33,415
Country Ranking

AMPL 22

Perl
183

R
3,785

genome-scripts

Genome Scripts used in fungal comparative genomics

mTEA

Mosquito TE Annotation

htbda_perl_class

High Throughput Biological Data Analysis using Perl

subopt-kaks

Suboptimal alignments and Ka, Ks calculations

fungi-gene-prediction-params

Provide trained gene prediction parameters for Fungal genome annotation

Tutorial_GenomeEvolution

Genome Evolution Lecture for Phylogenomics Workshop

fungaltools

Misc scripts for fungal tools, mostly for use in papers

short-read-db

Database for shortreads and comparing overlap with genomic features

cndtools

fork of cndtools

pubmed_to_COA

Write a Collaborating Authors table suitable for USDA/NSF COA/COI files

otu_cluster

Cluster OTUs based on % similarity, mostly scripts to pipeline into other tools

gbrowse_conf_fungalgenomes

Supporting fungalgenomes.org website

mobedac-fungi

MOBeDAC Fungi Database

pan-fungal-project

A Pan-Fungal Genomes Database

thesis

Perl Code from my Thesis (2006)

CSHL_NGS

NGS DNA analysis for the CSHL 2012 Programming for Biology course

ucr-biocluster-scripts

UCR Biocluster job scripts

macports

My local macports files

hyphaltip.github.io

GitHub home for hyphaltip

GEN220_2015

GEN220 course, Fall 2015 edition

H3K27

H3K27 neurospora project

TEamRice

Rice TE project

uniprot_tools

Some tools manipulating uniprot/sprot related data

KassonLab_PopGenomics_Nectriaceae_magnoliae

Nectriaceae magnoliae population genomics

rhizobia-genomics

Scripts to support bacterial genomics project

neolecta

neolecta annotation and analysis