• Stars
    star
    12
  • Rank 1,597,372 (Top 32 %)
  • Language
    Java
  • License
    GNU General Publi...
  • Created almost 4 years ago
  • Updated 9 months ago

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Bioinformatics pipeline to identify differentially active transcription factors between conditions using expression and epigenetic data

More Repositories

1

OpenLabFramework

A open source framework for research data management. DEMO at https://dockerhts.compbio.sdu.dk/OpenLabFramework/login/auth
JavaScript
20
star
2

data-leakage-ppi-prediction

Code associated with the paper 'Cracking the blackbox of deep sequence-based protein-protein interaction prediction'
C++
18
star
3

SPONGE

Sparse Partial correlation ON Gene Expression - an R package for fast and robust ceRNA network inference
R
11
star
4

BiCoN

Network Constrained Biclustering PyPI package
Python
10
star
5

epigen

EpiGEN: an epistasis simulation pipeline
Python
8
star
6

namco

R
8
star
7

ASimulatoR

ASimulatoR: splice-aware RNA-seq data simulation https://doi.org/10.1093/bioinformatics/btab142
R
6
star
8

circRNA-sponging

R
4
star
9

keypathwayminer-R

R package for de novo pathway enrichment using KeyPathwayMiner
R
4
star
10

HiTSeekR

An R shiny web application for the analysis of various types of high-throughput screening data
R
4
star
11

BiCoN-web

Network Constrained Biclustering (BiCoN) web platform
JavaScript
4
star
12

cyanus

A Systematic Comparison of Differential Analysis Methods for CyTOF Data & CYANUS App
R
4
star
13

NeEDL

C++
3
star
14

drevalpy

Python
3
star
15

MIRACLE

Microarray R-based Analysis of Complex Lysate Experiments
JavaScript
3
star
16

PDAC-molecular-classifier-validation

Python
2
star
17

housekeepr

R
2
star
18

analysis_of_circRNA_sponges

Pipeline for the systematic analysis of circRNAs that act as miRNA sponges
R
2
star
19

DysRegNet_package

Inferring patient-specific regulatory alterations
Jupyter Notebook
2
star
20

keypathwayminer-core

Core module of KeyPathwayMiner. Used to build various frontend applications, such as a Cytoscape 3 app.
Java
1
star
21

DysRegNet

Python
1
star
22

SARS-CoV-2-platelets-analysis

Analysis and visualization scripts for Bongiovanni et al., 2020, "SARS-CoV-2 infection is associated with a pro-thrombotic platelet phenotype"
Jupyter Notebook
1
star
23

pathclass

R
1
star
24

SAVANAH

A web application for sample and plate management of complex high-throughput screening libraries
JavaScript
1
star
25

circRNA-detection

Scripts, documentation and results for the Bachelor Thesis "Analysis of Circular RNAs As miRNA Sponges".
R
1
star
26

CyTOF_RPs_MPs

R
1
star
27

BiGAnts-PyPI-package

Python
1
star
28

16S-rRNA-gene-Functional_benchmark_profiling

C#
1
star
29

splicingCREs

Python
1
star
30

Ex-Breast-Cancer-Survival

Jupyter Notebook
1
star