currocam/speedytree

Stars
3
Rank 3,944,206 (Top 79 %)
Language
Rust
License
MIT License
Created about 1 year ago
Updated 6 months ago

currocam/speedytree

currocam

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Canonical and RapidNJ implementations of Neighbor-joining in Rust

HMMERutils

A bunch of convenient functions to search for homologous sequences using the HMMER API, annotate them taxonomically, calculate physicochemical properties and facilitate exploratory analysis of homologous sequence data.

currocam.github.io

Portfolio quarto blog

TheOffice

Natural Language Processing with Python for The Office

BiRC-AiB-Projects

barc-stonks

A BaRC event app to regulate drink prices

CPVO_Register

Web Scrapper for the CVPO (Community Plant Variety Office) for surveillance of intelectual property of plant varieties.

Jupyter Notebook

processing-local-alignments-rust

Processing local alignments

biorreactores-berkeley

Scripts para el programa Berkeley Madonna que modelizan biorreactores.

IlluminaSnakemake

RawIlluminaPipeline

From raw illumine reads to draft assemblies and annotations

Java_Eventex_RosalingProblems

Trabajo final del Curso de Java de Eventex 2022.

TwitterNetwork

Build a Twitter’s social network from followers until it finds a connection to a specified user

toolkit4pySCA

Tools to perform Statistical Coupling Analysis in a simple way. Integrates pySCA in R and uses HMMER to search for homologous sequences.

BiRC-Thyme

A chromosome-level assembly of Thymus vulgaris using Homology-Based scaffolding

EnvironmentalSciencesAarhus-2022

TravelingSalesmanGA

Genetic Algorithm applied to the Traveling Salesperson Problem

STRESS-docker

A Docker image from which to use STRESS, a framework for identifying potential allosteric residues

MoocBioinformatica

Distintas ideas inspiradas en el MOOC Machine Learning y Big Data para la Bioinformática (1ª edición) para afianzar los contenidos del mismo.

Jupyter Notebook

genomic-offset-thyme

Prediction of maladaptation from ecological and genomic data using genomic offsets

biotools_hQC

Activity notebook on the Human glutaminyl cyclase (hQC) protein using the lazarus development environment for the Protein Engineering course 2021-2022.

kmerBloomFilter

A script to extract all kmers appearing more than once using a Bloom Filter.

stat_rethinking_2024