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dnaPipeTE
dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify Transposable Elements in small samples of NGS datasets. It is very useful to quantify the proportion of TEs in newly sequenced genomes since it does not require genome assembly and works on small datasets (< 1X).TE-Aid
Annotation helper tool for the manual curation of transposable element consensus sequencesrm2gff3
Convert RepeatMasker ".out" file into a gff3 with colors!!!TypeTE
Genotyping of segregating mobile elements insertionsdnaPT_utils
A collection of scripts to perform several downstream analyses with dnaPipeTE 1.3consensus2genome
[DEPRECATED] R function that blast any TE consensus to reference genome and output mapping graphtyperef
Bi-allelic genotyping of reference transposable elementsLove Open Source and this site? Check out how you can help us