Clément Goubert (@clemgoub)
github

clemgoub

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  • Stars
    star
    134
  • Global Rank 164,372 (Top 6 %)
  • Followers 49
  • Following 25
  • Registered about 10 years ago
  • Most used languages
    Shell
         37.5 %
    R
         25.0 %
    Python
         12.5 %
    Perl
         12.5 %
    Dockerfile
         12.5 %
  • Location 🇺🇸 United States
  • Country Total Rank 41,309
  • Country Ranking
    Dockerfile
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Top repositories

1

dnaPipeTE

dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify Transposable Elements in small samples of NGS datasets. It is very useful to quantify the proportion of TEs in newly sequenced genomes since it does not require genome assembly and works on small datasets (< 1X).
Dockerfile
46
star
2

TE-Aid

Annotation helper tool for the manual curation of transposable element consensus sequences
R
38
star
3

rm2gff3

Convert RepeatMasker ".out" file into a gff3 with colors!!!
Shell
19
star
4

TypeTE

Genotyping of segregating mobile elements insertions
Perl
19
star
5

dnaPT_utils

A collection of scripts to perform several downstream analyses with dnaPipeTE 1.3
Shell
5
star
6

consensus2genome

[DEPRECATED] R function that blast any TE consensus to reference genome and output mapping graph
R
3
star
7

So2

So2 TE Bioinformatic ressources -- Parisot et al. 2020
Shell
2
star
8

typeref

Bi-allelic genotyping of reference transposable elements
Python
1
star