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prometheus-sql
Service that exposes Prometheus metrics for a SQL result set.sql-agent
HTTP interface for executing ad-hoc SQL queries.dataexpress
[NOT MAINTAINED] DataExpress is a simple, Scala-based cross database ETL toolkit supporting Postgres, MySql, Oracle, SQLServer, and Sqlitedicom-anon
Python DICOM Anonymizeravocado
Metadata APIs for Djangoorigins
Origins is an open source bi-temporal database for storing and retrieving facts for slowly-changing data. It support "time travel" queries and has built-in change detection.django-forkit
**INACTIVE** Adds support for shallow and deep forking (copying) Django model instances.nats-rpc
RPC layer on top of NATS standardizing on Protocol Buffers.twitter-adr-blstm
A model for finding mentions of adverse drug reactions in Twitter postseda
eda is a library for implementing event-driven architectures.cilantro
Official client for Harvest (http://harvest.research.chop.edu)data-models
Collection of various biomedical data models in parseable formats.harvest
Harvest CLI and starter project templatestudycentric
StudyCentric - research DICOM viewerdiff-table
varify
Clinical DNA Sequencing Analysis and Data Warehouseserrano
Serrano implements a hypermedia API for Avocado. Avocado is a Django app which targets developers who are interested in letting their data do the work for them.modeltree
Django model relation tree traversal, i.e. automatic joins.sql-importer
Import CSV files into Postgres with automatic column typing and table creation.dicom-pipeline
An automated pipeline for reviewing, anonymizing and publishing research DICOM studiesdrug_word_embeddings
development and intrinsic evaluation of drug related word embeddings using PubMed abstracts and DrugBanksepsis_01
data-models-sqlalchemy
SQLAlchemy models and DDL and ERD generation from chop-dbhi/data-models style JSON endpoints.django-webhooks
Simple webhooks implementation for Djangodjango-sts
State Transition System for Djangodjango-dicom-review
harvest-vocab
Abstract models and manager for querying hierarchical data for Harvestscds
Slowly-Changing Dimension Store (prototype)django-redcap
Utilities for porting REDCap projects to and from Django modelsredcap-repeat
Script for REDCap data dictionaries to support repeating fields and groups of fields.netezza-docker
Dockerfile for the Netezza ODBC driver.omop_harvest
OMOP CDMV4 data model with OSIM2 data in Harvestvscode-multiline-string-editor
Edit multiline strings that need to be encoded as single-line strings (for example, JSON strings that contain literal `\n` characters) in Visual Studio Code.arrc
AudgenDB radiology report text classification and REST servicevarify-data-warehouse
Data model and loading pipeline for Varifyharvest-openmrs
Harvest demo application for OpenMRSsql-schema-exporter
Utility to export schema information from a relational database to JSON.django-concerns
Django app for reporting privacy concernsschema-registry
General purpose schema registry.redcap-pdf-plugin
grin_pipeline
The exome pipeline used for the GRIN epilepsy pilotbiorepo-portal
data-models-generator
Script to generate files in the data models format from common data sources.bitindex
Bitmap index for any, all, not any, and not all set operations.twitter-adr-convnet
Convolutional NNets for tweet classificationdjango-objectset
Set-like abstract model class for Djangodjango-siteauth
Middleware that allows for site-wide URL-based access controlHaaS
Harvest as a Servicesql-extractor
aliases
A service for generating random external-facing aliases to internal identifiers.htq
Queues HTTP requests and stores the response in Redis for later retrievalgo-unats
A unified Go API for NATS and NATS Streaming.ehb-datasources
datasource drivers, e.g. REDCap and Nautilus, that can be plugged into the Biorepository Portalharvest-template
Project template for Harvest applications.origins-domains
Collection of curated domain models for Origins.redcap-harvest
Dockerfile and tools for deriving Harvest applications from REDCap projects.phenomantics
Multiple projects related to variant prioritization using phenotype semantic similarityharvest-site
Website and documentation for The Harvest Stackehb-service
etl-package
An ETL Framework using cbmi/dataExpressdata-models-django
Django model generator for chop-dbhi/data-models-service style JSON metadata.coriander
[NO LONGER ACTIVE} SCSS style sheets for django-cilantrotypeselect
Wrapper for twitter/typeahead.js to enable multi-select input.dicom-tools
Utility scripts for pushing and receiving DICOM filesmybic
myBiC bioinformatics portalupdateurls
Utility script to update all urls in a text file to their latest locationmasino-lab-obesity-incidence
Obesity incidence research output under PBD projectsqltojson
Tool to build/export JSON documents from nested SQL queries.origins-dispatch
Origins Dispatch service.oss
Guide to CBMi's open sourced softwarevarify-site
data-models-validator
Set of tools for validating data that should conform to a data model.django-pdfappend
Simple django-app to retrieve multiple PDFs and return as a single PDFtwitter-adr-lexicon
Adverse drug reaction Lucene index creator and event detection analysisLove Open Source and this site? Check out how you can help us