cassj/Creyghton_H3k27ac

Stars
1
Language
Created over 13 years ago
Updated over 13 years ago

cassj/Creyghton_H3k27ac

cassj

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Histone H3K27ac separates active from poised enhancers and predicts developmental state

brat-docker

containerised brat (http://brat.nlplab.org/)

awesomething

playing with the sciverse stuff at dev8D

my_bioinfo_scripts

Just a dumping ground for an assortment of bioinformatics scripts in various states of disrepair.

chipseq_pipeline

Scripts for Buckley Lab ChIPseq pipeline

primer_designer

Primer design helpers for the Buckley lab

REST_ChIP_timecourse

REST_ChIPseq_109-109

Chiara Soldati's REST ChIPseq in 109/109 cells

science_hackday_thing

biomart-docker

Containerised biomart

excel2csv

make csv files form simple excel workbooks

mef_h3k4me3_mikkelsen

H3k4me3 ChIPseq in Mouse Embryonic Fibroblasts from Mikkelsen

ns5_vs_ns5dastro_lumixpn

Manu & Angela's NS5 vs NS5-derived astrocyte Illumina Bead Array expression data

FloRes_vs_FloResCre_RNAseq

Chiara Soldati's RNAseq (SOLiD) data from ESC cells with a REST Conditional Knockout

ctx_bmp_lumiarray

Alessandro Michelucci's NS5/CTX BMP/FBS Illumina expression data

chiara_miRNA_REST

DNRest_aNSCvNS5

A comparison of the effects of DNRest in NS5 and aNSC

catpaws

CApistrano Tasks Pertaining to AWS

pasquale_DNRest_illumina

Pasquale's DNRest illumina expression data

neuronal_cell-line_faireseq

Gerome Breen's Neuronal Cell Line FAIREseq data

Magdalena_Astrocytes

Expression data from Goetz lab

Rest_ChIPseq_timecourse

Rest ChIPseq timecourse (Chiara Soldati)

Johnson_CHIPPET

Rory Johnson's REST ChIPPET and expression data from ESC and NS5 cells

bioperl-sfold

Bioperl Run wrappers for Sfold

DNREST_expression_mouse_astrocyte_volta

Illumina expression arrays, DN-REST v Empty Vector in mouse Astrocytes, Manuela Volta

bithell_Mash1_ChIP_meta

Abrajano_REST_CoREST_ChIPchip_glial

doi:10.1371/journal.pone.0007665

Abrajano_REST_CoREST_ChIPchip_stemcells

doi:10.1371/journal.pone.0007936

Abrajano_REST_CoREST_ChIPchip_neuronal

doi:10.1371/journal.pone.0007936

role_of_rest_in_astrocytes

Integrative analysis of various REST in astrocyte datasets

puppet_stuff

piman

ns5_h3k4me3_chipseq

Alessandro's H3k4me3 ChIPseq data from NS5

dzil-profiles

ProjectManager

Tools for keeping track of bioinfo projects

bioperl-unafold

Bioperl wrapper, parser for Unafold

cahoy_et_al

motifieR

Classes and functions for creating, manipulating and using PSSMs in R

ns5dastro_h34kme3_chipseq

Alessandro's H3k4me3 ChIPseq data from NS5-derived Astrocytes

FloResCre_ChIPseq

ChIPseq for various Histone modifications in FloRes and FloResCre cell lines (Chiara Soldati)

mouse_ESC_REST_ChIPseq

mohn_08_chipchip

Lineage-Specific Polycomb Targets and De Novo DNA Methylation Define Restriction and Potential of Neuronal Progenitors

rome

R-Omics Made Easy: Framework for easy generation of R-based web interfaces and workflows

volta_REST_ChIP_meta

mikkelsen07

ChIPseq data from Mikkelsen '07 (|doi:10.1038/nature06008)

CTX12_H3K4me4_ChIPseq_mini

ns5_ns5dastro_h3k4me3_peakdiff

aSVZ_REST_ChIP

CTX12_Astro_H3K4me_ChIPseq

Alessandro Michelucci's ChIPseq for H3K4me3 (vs Input) in CTX12 NSCs and in Astrocytes derived from that cell line

DNRest_timecourse_lumixpn

Expression data from DNRest Time Course (Chiara Soldati)

SVMergeSGE

modifications to SVMerge to generate SGE jobs instead of LSF

bioperl-wrapperbase-accessors

Autogeneration of accessors for parameters in bioperl wrappers

buckley_ami

Chiara_d4_c18_timecourse_expression

mouse_NSC_REST_ChIP

REST_ChIP_mouse_astrocytes_volta

Manuela Volta's REST ChIP in Astrocytes