Discover UtrechtUniversity/best-practices Open Source project

This is a library of latex classes for creating documents according to the Utrecht University style guide.

uucls

TeX

yoda

A system for reliable, long-term storing and archiving large amounts of research data during all stages of a study.

Jinja

workshop-introduction-to-R-and-data

Material for the workshop 'Introduction to R & data'

An Apache WebDAV interface to iRODS

davrods

privacy-engineering-tools

Overview of tools to de-identify, synthesize and work safely with (sensitive) data

R-data-cafe

R Cafe community event Utrecht University

A wrapper around the python-irodsclient to allow for easy interaction with iRODS servers.

iBridges

Getting started with GitHub @UtrechtUniversity

getting-started

UU-dissertation-template

This is a Utrecht University dissertation template for LaTeX

TeX

dataprivacyhandbook

Repository for the Data Privacy Handbook @UtrechtUniversity, a practical guide on handling personal data in scientific research

An Airflow pipeline for the collection of historical Twitter data

getOldTweets-Airflow

Material for the workshop 'Best Practices for Writing Reproducible Code'

workshop-computational-reproducibility

Python modules for detecting Chimpanze sounds in bioacoustic datasets using machine learning and deep learning.

animal-sounds

Implementation of the SWORDS framework for Utrecht University.

SWORDS-UU

Installation scripts for SURF ResearchCloud catalog components

researchcloud-items

UU Research Engineering team

research-engineering

EPOS Multi-scale laboratories CKAN deployment

epos-msl

Jinja

yoda-portal

Web portal for Yoda: https://github.com/UtrechtUniversity/yoda

JavaScript

yoda-ruleset

iRODS ruleset and policies for Yoda: https://github.com/UtrechtUniversity/yoda

Ricgraph - Research in context graph

ricgraph

Intergrating existing data sets on transmission experiments by using semantic web technologies

summer-fair

Precision nudging with machine learning

nudging

Project to perform semantic segmentation on (panoramic) street photo's

streetview-segmentation

Template to implement the SWORDS framework for your organisation

SWORDS-template

Package for the RE Patent Breakthrough project

patent-breakthrough

MIMOSA: Integrated Assessment Model for global cost-benefit analysis of climate policy

mimosa

Python package to replace identifiable strings in multiple files and folders at once.

anonymouus

Clumped isotope measurement processing script for Thermo Fisher MAT 253 plus isotope ratio mass spectrometer with the Kiel IV

clumped-processing

Make your research data and code FAIR with the UU FAIR Cheatsheets!

FAIR-Cheatsheets

msl_vocabularies

SCCA

Spectral Clustering Correspondence Analysis

irods-Csharp

C# iRODS library, implements the iRODS RPC API

ia-webscraping

An AWS workflow for collecting webpages from the Internet Archive

Repository for the Programming Cafe community event at @UtrechtUniversity

programming-cafe

Project to retrieve and process streetview/panorama data

streetview-greenery

Packer definitions and scripts for generating containers and VMs mimicking SURF Research Cloud workspaces.

SRC-test-workspace

HCL

tweet_collector

This repository provides a guideline, including some pieces of code, for researchers with limited coding skills, to collect tweets and analyse them.

Custom CKAN theme for the CD² metadata portal

cTORS

C++

cd2-ckan-theme

CSS

MATLAB-on-HPC

Tools and instructions for developing and running MATLAB scripts on HPC clusters

MATLAB

workshop-r-for-humanities

Materials for the workshop 'R for Humanities' @UtrechtUniversity

TeX

emissions

google-semantic-location-history

Faking Google Semantic Location History data

cd2-config

Template repository for creating a UU styled Quarto presentation

uu-quarto-presentation-template

JavaScript

remindo-api

Python API wrapper for Remindo Toets software

Check consistency between irods resource and on-disk vault.

irods-consistency-check

Knowledge Graph Exploration and Analysis platform

BOLD-KB-Profiler

TypeScript

simple-python-template

simple template project

irods-uu-microservices

Miscellaneous iRODS microservices developed or modified by Utrecht University.

C++

open-textbooks

Repository to create an open textbook about creating open textbooks with Quarto, hosted on GitHub

One day workshop: Introduction to Python and Pandas.

workshop-introduction-to-python

Github page for the summerschool course "A gentle introduction to Bayesian Estimation"

BayesianEstimation

The look and feel of Utrecht University on GitHub

.github

Information and mock data repository for the Open Science Monitor

OpenScienceMonitor

Scheme

dataprivacysurvey

Code for analysing data from the Data Privacy Survey (2022)

re-python-package-poetry

Python package template to use with poetry

workshop-reproducible-manuscripts

Hyde-Platform

Python package to retrieve public Utrecht University employee profile info.

uupeeps

A R shiny app to investigate the consequences of violating each of the assumptions of ANOVA

ANOVA-assumptions

ilab-catalog

Deployments scripts for the UU Catalog: https://catalog.data.uu.nl/

Jinja

ii - command-line utilities for iRODS

A website that will provide an overview of all the educational shiny apps

rdm-utilities

ShinyEducation

miffy

uu-jekyll-theme

news-scraping

vagrant-irods

Vagrant configurations for iRODS

Shell

MITAR

Repository containing dynamical models for the MITAR project

autumn-fair

Follow up on Summer-Fair.

Anova-Regression

Anova and regression equality

reclarify

automated workflow for processing data produced by ldir (agilent clarity) particle analysis software

epos-msl-theme

CKAN custom theme for EPOS-MSL

Elixir/Phoenix webapplication for the coastsnap project

coast_snap

Elixir

DCC2021-FAIRYODA4Communities

Project Repository for DCC2021 funded project FAIR Yoda for Communities (FY4C)

irods-ruleset-research

This ruleset is deprecated and merged with https://github.com/UtrechtUniversity/irods-ruleset-uu

icat-data-generator

synthetic data generator for testing iRODS iCAT database

easy switching between iRODS iCommands configurations

iswitch

Assigning NAICS codes to Kickstarter projects

kickstarter

Client-side Yoda tools - mainly intended for data managers and key users

yoda-clienttools

Ansible modules for syncing data with iRODS using iBridges.

ibridges-ansible

A shiny app that gives an interactive look at ANOVA and ANCOVA

ANCOVA_Shiny

expertsearch

Code and questionnaire to accompany the CHIIR 2024 paper "Improving expert search effectiveness: Comparing ways to rank and present search results"

This is the repository underlying the landing page for the Data Privacy Project @UtrechtUniversity, the Netherlands.

dataprivacyproject

doy-ckan-ansible

workshop-open-textbooks

Material for a short version of the workshop 'Best Practices for Writing Reproducible Code'

intro-computational-reproducibility