Nesvilab/dia-umpire-gui

Stars
1
Language
Java
Created over 8 years ago
Updated over 7 years ago

Nesvilab/dia-umpire-gui

Nesvilab

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Simple one page java gui for DIA-Umpire

FragPipe

A cross-platform proteomics data analysis suite

philosopher

PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering

MSFragger

Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics

MSBooster

MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring

IonQuant

A label free quantification tool.

PTM-Shepherd

A tool for summarizing open search results

TMT-Integrator

A tool integrates channel abundances from multiple TMT samples and exports a general report for downstream analysis.

PD-Nodes

The implementation of MSFragger and Philosopher (PeptideProphet) as Proteome Discoverer nodes

Crystal-C

Crystal-C: A computational tool for refinement of open search results

FragPipe-Analyst

An easy-to-use and interactive web application for FragPipe

FragPipeAnalystR

msconvert-scripts

Some shell scripts related to raw format conversion using msconvert

EntrapBench

Generate entrapment database and calculate false discovery proportion (FDP)

MSFragger-DIA-manuscript

Python and R scripts to generate the figures in the MSFragger-DIA paper

nesvilab.github.io

Nesvilab website

FragPipeTPP

Enables FragPipe Ouput from (TPP workflow) to be made compatible with TPP-R package