Nesvilab/MSFragger

Stars
83
Rank 392,854 (Top 8 %)
Language
HTML
Created almost 6 years ago
Updated 12 months ago

Nesvilab/MSFragger

Nesvilab

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics

FragPipe

A cross-platform proteomics data analysis suite

philosopher

PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering

MSBooster

MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring

IonQuant

A label free quantification tool.

PTM-Shepherd

A tool for summarizing open search results

TMT-Integrator

A tool integrates channel abundances from multiple TMT samples and exports a general report for downstream analysis.

PD-Nodes

The implementation of MSFragger and Philosopher (PeptideProphet) as Proteome Discoverer nodes

Crystal-C

Crystal-C: A computational tool for refinement of open search results

FragPipe-Analyst

An easy-to-use and interactive web application for FragPipe

FragPipeAnalystR

msconvert-scripts

Some shell scripts related to raw format conversion using msconvert

EntrapBench

Generate entrapment database and calculate false discovery proportion (FDP)

MSFragger-DIA-manuscript

Python and R scripts to generate the figures in the MSFragger-DIA paper

dia-umpire-gui

Simple one page java gui for DIA-Umpire

nesvilab.github.io

Nesvilab website

FragPipeTPP

Enables FragPipe Ouput from (TPP workflow) to be made compatible with TPP-R package