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MetONTIIME
A Meta-barcoding pipeline for analysing ONT data in QIIME2 frameworkONTrack
A MinION-based pipeline for tracking species biodiversityMetaBlast
A Metagenomic pipeline for parallel Blast analysis and report generation.CharONT2
A NextFlow ONT-based pipeline for characterizing long genomic regionsONTrack2
A Nextflow MinION-based pipeline for tracking species biodiversitynf-m6anet
A NextFlow pipeline for m6A detection from Nanopore direct RNA-seq dataCharONT
An ONT-based pipeline for characterizing long genomic regionsMetaKraken2
A Metagenomic pipeline for Kraken2 analysis and Krona report generation.UMInator
A Nextflow pipeline for generating consensus sequences from Nanopore reads tagged with UMIsONT_preprocessing
A preprocessing pipeline for ONT datapycoMethFlow
A nextflow pipeline for running pycoMethQIIME2_Illumina
A Meta-barcoding pipeline for analysing Illumina data in QIIME2 frameworkIllumina_variant_calling
A quality check, alignment and small variant calling pipeline for Illumina paired-end readsONToHap
An ONT-based pipeline for haplotype phasingCovid19_ONT_Artic
A set of scripts for running the ARTIC pipeline from fast5 ONT data to filtered SARS-CoV-2 variants and coverage plotsnf-msspe
A NextFlow pipeline for Metagenomic Sequencing with Spiked Primer EnrichmentMosaicViewer_FMR1
A pipeline for schematic IGV visualization of FMR1 alleles with somatic mosaicismnf-eligos
A NextFlow pipeline for modifications detection from Nanopore direct RNA-seq dataMosaicViewer_HTT
A pipeline for schematic IGV visualization of HTT alleles with somatic mosaicismMosaicViewer_CNBP
A pipeline for schematic IGV visualization of expanded CNBP alleles with somatic mosaicismLove Open Source and this site? Check out how you can help us