Simone Maestri (@MaestSi)
github

MaestSi

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  • Stars
    star
    134
  • Global Rank 164,164 (Top 6 %)
  • Followers 18
  • Registered about 8 years ago
  • Most used languages
    R
         47.6 %
    Shell
         33.3 %
    Nextflow     19.0 %
  • Location 🇮🇹 Italy
  • Country Total Rank 1,497
  • Country Ranking
    Nextflow     1
    R
         17
    Shell
         229

Top repositories

1

MetONTIIME

A Meta-barcoding pipeline for analysing ONT data in QIIME2 framework
Nextflow
57
star
2

ONTrack

A MinION-based pipeline for tracking species biodiversity
R
12
star
3

MetaBlast

A Metagenomic pipeline for parallel Blast analysis and report generation.
Shell
9
star
4

CharONT2

A NextFlow ONT-based pipeline for characterizing long genomic regions
R
6
star
5

ONTrack2

A Nextflow MinION-based pipeline for tracking species biodiversity
R
6
star
6

nf-m6anet

A NextFlow pipeline for m6A detection from Nanopore direct RNA-seq data
Nextflow
6
star
7

CharONT

An ONT-based pipeline for characterizing long genomic regions
R
5
star
8

MetaKraken2

A Metagenomic pipeline for Kraken2 analysis and Krona report generation.
Shell
5
star
9

UMInator

A Nextflow pipeline for generating consensus sequences from Nanopore reads tagged with UMIs
R
4
star
10

ONT_preprocessing

A preprocessing pipeline for ONT data
R
3
star
11

QIIME2_Illumina

A Meta-barcoding pipeline for analysing Illumina data in QIIME2 framework
Shell
3
star
12

pycoMethFlow

A nextflow pipeline for running pycoMeth
Nextflow
3
star
13

Illumina_variant_calling

A quality check, alignment and small variant calling pipeline for Illumina paired-end reads
Shell
3
star
14

ONToHap

An ONT-based pipeline for haplotype phasing
R
2
star
15

Bionano_fixdups

A script for removing artificial duplications introduced by Bionano solve scaffolding pipeline
R
2
star
16

Covid19_ONT_Artic

A set of scripts for running the ARTIC pipeline from fast5 ONT data to filtered SARS-CoV-2 variants and coverage plots
R
2
star
17

nf-msspe

A NextFlow pipeline for Metagenomic Sequencing with Spiked Primer Enrichment
R
2
star
18

nf-eligos

A NextFlow pipeline for modifications detection from Nanopore direct RNA-seq data
Nextflow
1
star
19

MosaicViewer_HTT

A pipeline for schematic IGV visualization of HTT alleles with somatic mosaicism
Shell
1
star
20

MosaicViewer_FMR1

A pipeline for schematic IGV visualization of FMR1 alleles with somatic mosaicism
Shell
1
star
21

MosaicViewer_CNBP

A pipeline for schematic IGV visualization of expanded CNBP alleles with somatic mosaicism
Shell
1
star