FunctionLab/DeepArk

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Language
Python
License
BSD 3-Clause Clea...
Created about 5 years ago
Updated over 3 years ago

FunctionLab/DeepArk

FunctionLab

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Modeling the genomic regulatory codes of fly, mouse, worm, and fish with deep learning

selene

a framework for training sequence-level deep learning networks

Jupyter Notebook

ExPecto

predicting expression effects of human genome variants ab initio from sequence

sei-framework

code to run sei and obtain sei and sequence class predictions

sei-manuscript

Code for reproducing the Sei manuscript results

Jupyter Notebook

tapioca

a framework for predicting global protein-protein interaction networks from dynamic mass spec data

giant-api

RESTful API for Functional Genomics

function

Python library for functional genomics

onboarding

Information for new Troyanskaya lab members

sleipnir

diseasequest-docker

giant-api-biojs

BioJS connector for GIANT

find_scripts

Code for training ontology-based CRF model for tissue-developmental stage-specific gene prediction

HeartENN-models

Documentation and scripts to run HeartENN (Richter et al., 2020)

flib