The deepTools ecosystem (@deeptools)
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deeptools

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  • Stars
    star
    1,921
  • Global Org. Rank 9,781 (Top 4 %)
  • Registered almost 11 years ago
  • Most used languages
    Python
         36.4 %
    C
         27.3 %
    C++
         18.2 %
    HTML
         9.1 %
    JavaScript
         9.1 %

Top repositories

1

pyGenomeTracks

python module to plot beautiful and highly customizable genome browser tracks
Python
758
star
2

deepTools

Tools to process and analyze deep sequencing data.
Python
670
star
3

HiCExplorer

HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.
Python
232
star
4

pyBigWig

A python extension for quick access to bigWig and bigBed files
C
208
star
5

HiCBrowser

Simple web browser to visualize HiC tracks
JavaScript
18
star
6

py2bit

A python library for accessing 2bit files
C
16
star
7

HiCMatrix

Python
11
star
8

Knight-Ruiz-Matrix-balancing-algorithm

C++
10
star
9

docker-galaxy-hicexplorer

Galaxy Docker Image for the HiCExplorer
HTML
10
star
10

deeptools_intervals

A python library for constructing interval trees with associated exon/annotation information
C
6
star
11

hicBuildMatrixCpp

C++ implementation of hicBuildMatrix
C++
2
star