Explore @aidenlab Open Source projects

Aiden Lab (@aidenlab)

aidenlab

Stars
1,000
Global Org. Rank 15,324 (Top 5 %)
Registered about 12 years ago
Most used languages

Java
38.5 %

Shell
30.8 %

C++
7.7 %

Python
7.7 %

Jupyter Notebook
7.7 %

HTML
7.7 %
Location 🇺🇸 United States
Country Total Rank 9,997
Country Ranking

Shell
390

Java
1,080

C++
3,415

juicer

A One-Click System for Analyzing Loop-Resolution Hi-C Experiments

Juicebox

Visualization and analysis software for Hi-C data -

3d-dna

3D de novo assembly (3D DNA) pipeline

straw

Extract data quickly from Juicebox via straw

JuiceboxLegacy

OLD REPOSITORY - Go to

JuicerTools

BEAR

BEAR: viral diagnostic analysis pipeline for SARS-CoV-2

JuiceboxGUI

welcome

Getting started with Hi-C data analysis

HiCTools

JuiceMe

Hi-Culfite Processing Pipeline

hic-format

pyStraw

Python only flavor of straw for streaming .hic data [Deprecated]

Jupyter Notebook

MDsimulations

Simulation code