Netherlands eScience Center (@NLeSC)

Top repositories

1

mcfly

A deep learning tool for time series classification and regression
JavaScript
361
star
2

python-template

Netherlands eScience Center Python Template
Python
161
star
3

litstudy

LitStudy: Using the power of Python to automate scientific literature analysis from the comfort of a Jupyter notebook
Python
131
star
4

xtas

Distributed text analysis suite based on Celery
Python
94
star
5

Massive-PotreeConverter

Convert massive pointcloud, for example ahn2 (640 Billion points) to potree format.
Python
79
star
6

mcfly-tutorial

tutorial for mcfly repository
Jupyter Notebook
76
star
7

awesome-research-software-registries

Awesome list of Research Software Registries
69
star
8

structure-from-motion

Structure from Motion Pipeline
Python
61
star
9

guide

Software Development Guide
HTML
45
star
10

scriptcwl

Create cwl workflows by writing a simple Python script
Python
40
star
11

root-conda-recipes

Conda recipes for building ROOT 5 and ROOT 6 binaries, root_numpy, rootpy, root_pandas, with both Python 2 and Python 3 support.
Shell
30
star
12

ShiCo

Netherlands eScience Center - Shifting Concepts Through Time project
Python
26
star
13

XAI

Prototyping about eXplainable Artificial Inteligence (XAI)
Jupyter Notebook
26
star
14

DiVE

An interactive 3D web viewer of up to million points on one screen that represent data. Provides interaction for viewing high-dimensional data that has been previously embedded in 3D or 2D. Based on graphosaurus.js and three.js. For a Linux release of a complete embedding+visualization pipeline please visit https://github.com/sonjageorgievska/Embed-Dive.
HTML
25
star
15

yeap16-ai-3d-printing

CNN's for bone segmentation of CT-scans.
Python
24
star
16

spot

Try the demo
JavaScript
21
star
17

ahn-pointcloud-viewer

3D point cloud visualization of the Netherlands
JavaScript
21
star
18

noodles

Computational workflow engine, making distributed computing in Python easy!
Jupyter Notebook
21
star
19

polyphase-filter-bank-generator

This code generates the filter weights for polyphase filter banks with arbitrary numbers of channels, and with configurable windows.
C++
19
star
20

spudisc-emotion-classification

Python
16
star
21

geospatial-voxels

geospatial-voxels
C#
16
star
22

PattyAnalytics

Reusable point cloud analytics software. Includes segmentation, registration, file format conversion.
Python
14
star
23

deep-learning-assignments-solutions

CS231n: Convolutional Neural Networks for Visual Recognition Assignment solutions
Jupyter Notebook
14
star
24

PattyVis

Webgl pointcloud visualization of the Via Appia based on potree
JavaScript
13
star
25

MAGMa

eMetabolomics project: Mass Annotation based on in silico Generated Metabolites
Python
13
star
26

Machine_Learning_SIG

The topics discussed in the Machine Learning SIG group.
Jupyter Notebook
12
star
27

cptm

Cross-Perspective Topic Modeling
Python
10
star
28

DifferentialEvolution

Java implementation of the Differential Evolution algorithm by Storn & Price
Java
10
star
29

pointcloud-benchmark

Python
9
star
30

case-law-app

JavaScript
8
star
31

PattyData

HTML
7
star
32

ahn-pointcloud-viewer-ws

Webservice for ahn pointcloud viewer
Java
6
star
33

Chemical-Analytics-Platform

Scripts to create chemical analytics platform based on Knime
Shell
6
star
34

full-stack-recipes

Full-stack guidelines and recipes with examples to create offline first reactive Web Applications with 'pluggable' world-wide adopted technologies.
6
star
35

Analytics-SIG

NLeSc Analytics SIG
Mathematica
5
star
36

software.esciencecenter.nl

eStep website with projects software and people.
Python
5
star
37

eAstroViz

Java
5
star
38

softwarehorrorgame

https://nlesc.github.io/softwarehorrorgame/SoftwareHorrorGame.html
HTML
5
star
39

enram

IDL
5
star
40

com-com-kernels

Kernels for computation and communication overlap
Cuda
5
star
41

nlesc.github.io

Overview of Github organizations of all NLeSC projects.
SCSS
4
star
42

nuxt-apollo-hasura

Full Sack Recipe with Nuxt + Apollo + Hasura
Vue
4
star
43

EEG-epilepsy-diagnosis

Detection of Epilepsy from EEG data (14 channel x 5 minutes)
R
4
star
44

boatswain

A simple build system for docker images
Python
4
star
45

reinforcement-learning-course

Code from excersizes and other documents related to following this course can be stored here.
Jupyter Notebook
3
star
46

Neon

OpenGL and Java (JOGL) based Visualization library
Java
3
star
47

pycoeman

Python Commands Execution Manager
Python
3
star
48

baklava

Deploy a Kubernetes cluster and big data services on the cloud.
Python
3
star
49

PowerSensor

PowerSensor is a low-cost, custom-built device that measures the instantaneous power consumption of GPUs and other devices at a high time resolution.
C++
3
star
50

LargeScaleImaging

Data, Software,Results and Publications for the Large Scale Imaging research @ NLeSc
TeX
3
star
51

nlesc-serverless-boilerplate

An AWS amplify boilerplate web application
TypeScript
3
star
52

spot-desktop-app

Desktop version of SPOT
CSS
3
star
53

OCTSegmentation

EYR4-OCTSEG
MATLAB
3
star
54

teamwork-for-research-software-development

This lesson teaches how to successfully work together in a team. It is geared primarily towards people that create research software in an academic setting, however the lesson is most likely also useful for anyone trying to work on a team in scientific projects. Finally we hope that anyone wanting to get better at working in teams can learn something from this lesson.
HTML
3
star
55

eEcology-Annotation-WS

Webservice for eEcology Annotation project.
HTML
2
star
56

spot-tutorial

Tutorial for SPOT
Python
2
star
57

natural-language-processing-sig

Information related to the meetings of the Natural Language Processing SIG of the Netherlands eScience Center
2
star
58

collab-demos

This repository collects knowledge about the demos in the Collaboratorium
Python
2
star
59

eEcology-Classification

Classification tool
Java
2
star
60

candYgene

Python
2
star
61

cwl-object-model

Work in progress object model proposal for CWL2
2
star
62

docker-couch-admin

Configures a web service using angular-schema-form and CouchDB
JavaScript
2
star
63

embodied-emotions-scripts

Python
2
star
64

TEAM2018

This is the repo for the 2018 TEAM sprint
2
star
65

3D_geospatial_risk_management

C
2
star
66

pycwl

Python Library for CWL
Python
2
star
67

SalientDetector-python

Python package for Large Scale Imaging research @ NLeSC
Jupyter Notebook
2
star
68

spot-framework

Try the demo
JavaScript
2
star
69

gpu-sig

The GPU Computing Special Interest Group (SIG) of the Netherlands eScience Center.
2
star
70

app-estep.esciencecenter.nl

Angular app used as frontend for estep website
JavaScript
2
star
71

eEcology-Annotation-UI

User interface for eEcology annotation project.
JavaScript
2
star
72

esibayes

Optimization and state estimation of dynamic models
HTML
2
star
73

zarrviz

A package to visualize zarr files using threejs
Svelte
2
star
74

eEcology-Classification-Database

Java
2
star
75

teamwork-sig

Special interest group on teamwork
1
star
76

eEcology-SMS-reciever

Webservice to store SMS messages into a database table
Python
1
star
77

NumTech-sig

Special Interest Group on Numerical Techniques
TeX
1
star
78

Aether

Communication library for distributed, heterogeneous and dynamic environments
Java
1
star
79

research.esciencecenter.nl

HTML
1
star
80

spot-server

JavaScript
1
star
81

SalientDetector-matlab

MATLAB Software for Large Scale Imaging research @ NLeSc
MATLAB
1
star
82

wasmbase64

C
1
star
83

Constellation

Java
1
star
84

Visualization-SIG

Visualization and Computer Graphics SIG
1
star
85

TuneDinia

C
1
star
86

eSalsa-Visualization

eSalsa globe visualization based on eSight
Java
1
star
87

eSalsa-MPI

This project contains the wide area MPI used in the eSalsa project
C
1
star
88

dask-cassandra-loader

A data loader to load load data from a Cassandra table into a Dask Dataframe.
Python
1
star
89

recordTimings

C++
1
star
90

DeskTracker

A Repository to track issues related to the desks in the eScience Center
1
star
91

eSalsa-POP

eSalsa project version of The Parallel Ocean Program
Fortran
1
star
92

embem-ml-dataset

1
star
93

geospatial-handbook

NLeSC Geospatial handbook
1
star
94

knowledge.esciencecenter.nl

NLeSC knowledge website
CSS
1
star
95

cwl-tutorial

Simple CWL tutorial based on the gentle introduction to CWL
1
star
96

eEcology-Classification-Web

Web interface for eEcology classification
Java
1
star
97

eEcology-Annotation-Model

classification of the bird behavoiur from the accelerometer data
MATLAB
1
star
98

asterisk

Astrophysics visualization for AMUSE, based on eSight
Java
1
star
99

rsemg

Code for exploration of clinical electromyography
Jupyter Notebook
1
star
100

eEcology-CartoDB

Documentation and script to setup a CartoDB server with eEcology tables
1
star