metagenomics_summer_school
Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in DecemberRNA-seq-workshop
Kakapo
Scripts and code for Kākāpō genomic datamethods-and-musings
A (growing) collection of information contributed by Genomics Aotearoa members. Semi blog post style bites of content.environmental_metagenomics
A quick workflow to get researchers started with the bioinformatic pipeline used in the Environmental Metagenomics program.Imputation-workshop
Gene_Regulatory_Networks_Simulation_Workshop
High-quality-genomes
This repository aims to hosting workflows/codes that have been developed for GA high-quality-genome projects.Reproducible_Bioinformatics
shell-for-bioinformatics
Intermediate-Advanced shell for BioinformaticsWorkshop-Bash_Scripting_And_HPC_Job_Scheduler
A workshop to get you started with automating your data analysis work in a High Performance Computing environmentlong-read-assembly
Long-read assembly workshopdata-management-resources
Repo supporting the manuscript 'Journeying towards best practice data management in biodiversity genomics'.hts_workshop_mpi
Training materials for the 2023 HTS Plant Health and Environment Laboratory workshopNextflow_Workshop
A workshop to help you integrate Nextflow in your analysis workflows for reproducible and scalable pipelines.Hi-C-workshop
cancer-seq-pipeline
Bpipe-based pipeline for processing cancer genomics data in fastq format through to annotated variants in a simple report.clinical_genomics
Workflows relating to the GA clinical genomics projectworkshops-nz
Intermediate-R
Pangenome-Graphs-Workshop
This repository contains material to construct pangenome graphs for a small bacteria dataset detailing every step in the Nesi environment.Introduction-to-R
Introduction to RIndigiDataAotearoa-IntroToShell
cloudsforresearch
A guide to getting started in the cloudSingularity
Genome-Assembly-Workshop
EWAS_DAP
EWAS Data Analysisadvanced-shell-for-bioinformatics
advanced-shell-for-bioinformaticsGA_community_pages
Pages for good practice discussion, examples and moreGenomicsAotearoa.github.io
Code and files for Genomics Aotearoa github.io websitebioinformatics-containers
Docker containers used by cancer-seq-pipeline.dbNSFP_build
Docker container to download dbNSFP 'database' and wrangle it into a format suitable for pipeline annotation processAGM-workshop-2023
Reproducibility with Nextflow and nf-core, structured for the one-day AGM training day workshopIndigiDataAotearoa_IntroToR
Intro to R coding block for Indigidata AotearoascRNA-seq-data-analysis
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