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metagenomics_summer_school
Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in SeptermberRNA-seq-workshop
Kakapo
Scripts and code for KΔkΔpΕ genomic dataenvironmental_metagenomics
A quick workflow to get researchers started with the bioinformatic pipeline used in the Environmental Metagenomics program.methods-and-musings
A (growing) collection of information contributed by Genomics Aotearoa members. Semi blog post style bites of content.Gene_Regulatory_Networks_Simulation_Workshop
High-quality-genomes
This repository aims to hosting workflows/codes that have been developed for GA high-quality-genome projects.Pangenome-Graphs-Workshop
This repository contains material to construct pangenome graphs for a small bacteria dataset detailing every step in the Nesi environment.long-read-assembly
Long-read assembly workshopReproducible_Bioinformatics
shell-for-bioinformatics
Intermediate-Advanced shell for BioinformaticsWorkshop-Bash_Scripting_And_HPC_Job_Scheduler
A workshop to get you started with automating your data analysis work in a High Performance Computing environmentdata-management-resources
Repo supporting the manuscript 'Journeying towards best practice data management in biodiversity genomics'.hts_workshop_mpi
Training materials for the 2023 HTS Plant Health and Environment Laboratory workshopNextflow_Workshop
A workshop to help you integrate Nextflow in your analysis workflows for reproducible and scalable pipelines.Hi-C-workshop
Introduction-to-R
Introduction to Rcancer-seq-pipeline
Bpipe-based pipeline for processing cancer genomics data in fastq format through to annotated variants in a simple report.EWAS_DAP
EWAS Data Analysisclinical_genomics
Workflows relating to the GA clinical genomics projectworkshops-nz
Intermediate-R
scRNA-seq-data-analysis
IndigiDataAotearoa-IntroToShell
cloudsforresearch
A guide to getting started in the cloudGenome-Assembly-Workshop
advanced-shell-for-bioinformatics
advanced-shell-for-bioinformaticsSingularity
bioinformatics-containers
Docker containers used by cancer-seq-pipeline.dbNSFP_build
Docker container to download dbNSFP 'database' and wrangle it into a format suitable for pipeline annotation processGenomicsAotearoa.github.io
Code and files for Genomics Aotearoa github.io websiteAGM-workshop-2023
VariomeGenomeAssembly
IndigiDataAotearoa_IntroToR
Intro to R coding block for Indigidata AotearoaGA_community_pages
Pages for good practice discussion, examples and moreLove Open Source and this site? Check out how you can help us