Jon Palmer (@nextgenusfs)
github

nextgenusfs

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  • Stars
    star
    378
  • Global Rank 72,191 (Top 3 %)
  • Followers 95
  • Following 2
  • Registered over 10 years ago
  • Most used languages
    Python
         76.9 %
    Shell
         15.4 %
    C++
         7.7 %
  • Location 🇺🇸 United States
  • Country Total Rank 19,587
  • Country Ranking
    Python
         3,349

Top repositories

1

funannotate

Eukaryotic Genome Annotation Pipeline
Python
290
star
2

amptk

AMPtk: Amplicon ToolKit for NGS data (formally UFITS)
Python
35
star
3

augustus

AUGUSTUS v3.2.1 for installation on Mac OS X
C++
11
star
4

redmask

Genome assembly soft-masking using Red (REpeat Detector)
Python
11
star
5

genome_scripts

collection of random scripts for processing genome related files. the shell scripts are specific to my environment and may not work elsewhere.
Python
9
star
6

gene2product

Curated list of gene names and product descriptions that pass NCBI genome submission rules.
Python
5
star
7

gfftk

GFF toolkit
Python
5
star
8

buscolite

BUSCOlite: simplified conserved marker gene prediction for genome annotation
Python
3
star
9

funannotate2

Eukaryotic genome annotation software.
Python
3
star
10

gapmm2

gapmm2: gapped alignment using minimap2 (align transcripts to genome)
Python
3
star
11

mhc_cluster

Scripts to process MHC DRB2 next-gen sequencing data
Python
1
star
12

jaaws

Jon's Awesome Assembly Wrapper Script
Shell
1
star
13

funannotate-paper

Scripts used in funannotate manuscript
Shell
1
star