nextgenusfs/amptk

Stars
35
Rank 750,836 (Top 15 %)
Language
Python
License
BSD 2-Clause "Sim...
Created over 9 years ago
Updated about 1 year ago

nextgenusfs/amptk

nextgenusfs

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

AMPtk: Amplicon ToolKit for NGS data (formally UFITS)

funannotate

Eukaryotic Genome Annotation Pipeline

augustus

AUGUSTUS v3.2.1 for installation on Mac OS X

redmask

Genome assembly soft-masking using Red (REpeat Detector)

genome_scripts

collection of random scripts for processing genome related files. the shell scripts are specific to my environment and may not work elsewhere.

funannotate2

Eukaryotic genome annotation software.

gene2product

Curated list of gene names and product descriptions that pass NCBI genome submission rules.

gfftk

buscolite

BUSCOlite: simplified conserved marker gene prediction for genome annotation

gapmm2

gapmm2: gapped alignment using minimap2 (align transcripts to genome)

mhc_cluster

Scripts to process MHC DRB2 next-gen sequencing data

jaaws

Jon's Awesome Assembly Wrapper Script

funannotate-paper

Scripts used in funannotate manuscript