Adam Kucharski (@adamkucharski)
github

adamkucharski

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  • Stars
    star
    191
  • Global Rank 127,734 (Top 5 %)
  • Followers 121
  • Following 15
  • Registered over 10 years ago
  • Most used languages
    R
         94.4 %
    HTML
         5.6 %

Top repositories

1

2020-ncov

Accompanying code for: Kucharski AJ, Russell TW et al. Early dynamics of transmission and control of COVID-19: a mathematical modelling study. Lancet Infectious Diseases, 2020
HTML
68
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2

scrapR

Extract raw underlying data from PDF figures
R
54
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3

rules-of-contagion

Code and data to accompany The Rules of Contagion
R
15
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4

2020-cov-tracing

Accompanying code for: Kucharski AJ, Klepac P et al. Effectiveness of isolation, testing, contact tracing, and physical distancing on reducing transmission of SARS-CoV-2 in different settings: a mathematical modelling study. Lancet Infectious Diseases, 2020
R
13
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5

hit-analysis

Accompanying code for: Hodgson D et al. The potential for vaccination-induced herd immunity against the SARS-CoV-2 B.1.1.7 variant. Eurosurveillance, 2020
R
5
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6

llm-api-scripts

Scripts for interface with common LLM APIs in R
R
5
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7

sir-multi-population

Simple multi-population SIR model
R
4
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8

reducing-uncertainty

Accompanying code for: Kucharski AJ, Riley S. Lancet Infect Dis. 2016
R
3
star
9

ebola-cfr

Accompanying code for: Kucharski et al, Lancet, 2014
R
3
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10

adams-prize

Code to accompany Adams Prize paper
R
3
star
11

contagion-review

Review paper: Contagion dynamics in real-life and digital settings
R
3
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12

covid-import-model

Modelling variant importations
R
2
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13

2020-cov-test-frequency

Analysis of screening tests for SARS-CoV-2
R
2
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14

seroshiny

Package for shiny dashboards for serological data
2
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15

fiji-denv3-2014

Accompanying code for: Kucharski AJ, Kama M et al. Using paired serology and surveillance data to quantify dengue transmission and control during a large outbreak in Fiji. eLife, 2018
R
2
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16

SIRfinalsize

Calculate final epidemic size in a heterogeneously mixing population
R
1
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17

flu-model

Accompanying code for: Kucharski AJ et al. Timescales of influenza A/H3N2 antibody dynamics. PLOS Biology, 2018
R
1
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18

epiexport

Calculating local epidemic size from exported cases
R
1
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19

real-time

Real-time reproduction number estimation
1
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20

school-networks-15

Accompanying code for: Kucharski AJ, Wenham C et al. Structure and consistency of self-reported social contact networks in British secondary schools. PLOS ONE, 2018
R
1
star