• Stars
    star
    8
  • Rank 2,099,232 (Top 42 %)
  • Language
    Python
  • License
    MIT License
  • Created almost 12 years ago
  • Updated about 7 years ago

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Python code to parse, manipulate, download, and visualise KGML (KEGG markup language) biological pathway data.

More Repositories

1

pyani

Application and Python module for average nucleotide identity analyses of microbes.
Python
192
star
2

find_differential_primers

Code for design of diagnostic PCR primers, and metabarcoding markers.
Python
57
star
3

ten_great_papers

Ten great papers for wet lab biologists starting out in computational biology
50
star
4

Teaching

Code and files used in teaching and training courses.
TeX
30
star
5

scripts

Miscellaneous scripts
Python
22
star
6

Teaching-Stan-Hierarchical-Modelling

Jupyter notebooks for teaching hierarchical Bayesian modelling with Stan
HTML
21
star
7

2018-03-06-ibioic

Teaching materials for 6-7th March 2018 delivery of introductory bioinformatics training course for IBioIC.
HTML
20
star
8

Teaching-Data-Visualisation

Presentation and exercises for the Software Sustainability Institute Research Data Visualisation Workshop (RDVW)
HTML
15
star
9

Teaching-IBioIC-Intro-to-Bioinformatics

Course materials for the IBioIC Introduction to Bioinformatics training course
HTML
10
star
10

pilercrpy

Python package for interacting with PILER-CR CRISPR repeat finding output.
HTML
9
star
11

github-best-practice

Links to GitHub best practice articles/blogs etc.
8
star
12

Notebooks-Bioinformatics

Jupyter/iPython notebooks related to bioinformatics.
Jupyter Notebook
8
star
13

Teaching-EMBL-Plant-Path-Genomics

Presentation and example material for the EMBL Plant and Pathogen Genomics workshop, 8-11 July 2014
Jupyter Notebook
8
star
14

sync_rifftrax

Notes on synchronising RiffTrax Just the Jokes with a movie.
Shell
7
star
15

Teaching-Comp-Genomics-Vis

Comparative Genomics and Visualisation teaching module
Jupyter Notebook
7
star
16

Teaching-Intro-to-Bioinf

Introduction to Bioinformatics training course slides
TeX
5
star
17

ncfp

Program and package that retrieves nucleotide coding sequences from NCBI that correspond to a set of input protein sequences.
Python
3
star
18

Teaching-SWC-Lessons

Lesson materials I have used when teaching Software Carpentry
HTML
2
star
19

Presentation-DataVis-Barplots

A presentation on data visualisation, focusing on deficiencies of barplots.
2
star
20

SI_Hugouvieux-Cotte-Pattat_2021

Supplementary information for pyani analyses reported in Hugouvieux-Cotte-Pattat et al. (2021) IJSEM, describing the novel genus Paradisiaca
Python
2
star
21

ggplot2_examples

Working through Hadley Wickham's ggplot2 book
1
star
22

ColorSpiral

Module to select colours automatically from a spiral in HSV colour space
Python
1
star
23

THAPBI-pycits

Repository for ITS diagnostics development as part of Phytothreats project
HTML
1
star
24

CLIMB

Notes on CLIMB servers
1
star
25

jupyter_demos

Sample notebooks for demonstrating Jupyter
Jupyter Notebook
1
star
26

23andMe

Scripts/functions for working with 23andMe data
Python
1
star
27

pyrbbh

Module to find reciprocal matches/clusters of protein sequences
Python
1
star
28

notebooks

iPython notebooks, and supporting files
Jupyter Notebook
1
star
29

pyADHoRe

Python code for handling i-ADHoRe output.
Python
1
star
30

mylabbook

Helper scripts for electronic lab book
Python
1
star
31

2021-01-13_sipbs_workshop

This repository provides a website and MyBinder-based interactive workshop for the 2021 SIPBS Research Day, on using Python to query UniProt.
HTML
1
star