Discover tpapp/HamiltonianABC.jl Open Source project

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Created over 7 years ago
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Hamiltonian Approximate Bayesian Computation for Julia.

DynamicHMC.jl

Implementation of robust dynamic Hamiltonian Monte Carlo methods (NUTS) in Julia.

Julia

240

julia-repl

Run an inferior Julia REPL in a terminal inside Emacs

lla

TransformVariables.jl

Transformations to contrained variables from ℝⁿ.

Julia

MultistartOptimization.jl

Multistart optimization methods in Julia.

Julia

let-plus

destructuring extension of let*

Common Lisp

PkgSkeleton.jl

Generate Julia package skeletons using a simple template system

Julia

DefaultApplication.jl

Julia package for opening a file with the default application determined by the OS.

Julia

LaTeXTabulars.jl

Write tabular data from Julia in LaTeX format.

Julia

LogDensityProblems.jl

A common framework for implementing and using log densities for inference.

Julia

DynamicHMCExamples.jl

Examples for Bayesian inference using DynamicHMC.jl and related packages.

Jupyter Notebook

array-operations

Common Lisp library that facilitates working with Common Lisp arrays.

Common Lisp

BrowseTables.jl

Julia package for browsing tables that that implement the Tables.jl interface as HTML.

Julia

MarkdownTables.jl

Lightweigth package to print a table that implements the Tables.jl interface in Markdown.

Julia

cl-colors

Simple color library for Common Lisp

Common Lisp

cl-random

Random variates for Common Lisp

Common Lisp

SpectralKit.jl

Building blocks of spectral methods for Julia.

Julia

MCMCDiagnostics.jl

Markov Chain Monte Carlo convergence diagnostics in Julia

Julia

skeleton.jl

Julia script for creating new packages quickly.

Julia

cl-num-utils

Numerical utilities, the successor of cl-numlib

Common Lisp

cl-slice

Array slices for Common Lisp

Common Lisp

ContinuousTransformations.jl

Continuous transformations from ℝ or ℝⁿ to various open sets

Julia

cl-bayesian

Common Lisp routines for Bayesian estimation and analysis.

Common Lisp

TrustRegionMethods.jl

Trust region methods for nonlinear systems of equations in Julia.

Julia

cl-data-frame

Data frames for Common Lisp

Common Lisp

ContinuousTimeMarkov.jl

Julia package for Markov chains in continuous time.

Julia

LogDensityProblemsAD.jl

AD backends for LogDensityProblems.jl.

Julia

EponymTuples.jl

Julia package for deconstructing dispatch on NamedTuples.

Julia

texlive-julia-minimal-docker

minimal docker setup for texlive and Julia

Shell

ffa

ABANDONWARE Foreign friendly arrays

Common Lisp

trivial-project-pathname

A very simple Common Lisp library for resolving pathnames relative to some directory, usually the sources.

Common Lisp

PushVectors.jl

workaround for julia#24909

Julia

AutoAligns.jl

Julia

cl-flexplot

A PGF/LaTeX based plotting library for Common Lisp.

Common Lisp

HighestDensityRegions.jl

Julia library for calculating Highest Density Regions

Julia

xarray

DEPRECATED A generalized interface for array-like objects with views

Common Lisp

latex-table

Pretty latex tables from Lisp matrices and vectors.

Common Lisp

ParametricFunctions.jl

Parametric function families.

Julia

Fretboards.jl

Julia package for visualizing chords on the guitar fretboard.

Julia

cl-rmath

Common Lisp wrapper for libRmath.

Common Lisp

ObjectPools.jl

An implementation of user-managed object pools in Julia.

Julia

PermaProgress.jl

Julia package for progress metering using the file system.

Julia

ihs-beamer

LaTeX Beamer template for the Institute of Advanced Studies, Vienna

TeX

RoguePkg.jl

Test, benchmark, and Pkg.dir for local packages outside ~/.julia

Julia

StrFs.jl

Julia packages for strings with fixed maximum number of bytes.

Julia

array-operations-old

DEPRECATED, OLD VERSION [Array operations (formerly part of FFA)]

Common Lisp

AltDistributions.jl

Implementations for some distributions using a consistent API and AD-friendly code.

Julia

tpapp-utils

Utilities used by my libraries.

Common Lisp

cl-jags

Interface to the Gibbs sampler JAGS from Common Lisp.

Common Lisp

FunctionalTables.jl

Julia package for working with (potentially large) columns of data.

Julia

SortedVectors.jl

Lightweight wrapper to declare that a vector is sorted.

Julia

tpapp.github.io-source-pre-2022

Source for tpapp.github.io.

Julia

SensitivityAnalysis.jl

Julia package for numerical sensitivity analysis.

Julia

cmdstan-docker

Docker container with CmdStan installed.

Dockerfile

StanSamples.jl

Read samples from CmdStan into vectors of the appropriate Julia type.

Julia

HiddenMarkovChains.jl

Hidden Markov Chain calculations in Julia

Julia

StataDTAFiles.jl

read and write Stata DTA files from Julia

Julia

LargeColumns.jl

Handle large columns (vectors of equal length) with bits types in Julia using mmap.

Julia

data-omnivore

Read tabular data into data frames

Common Lisp

TransformedLogDensities.jl

Create a log density for the LogDensityProblems.jl API using TransformVariables.jl

Julia

Miter.jl

A Julia plotting package using the PGF Basic Layer Core.

Julia

EconFunctions.jl

Julia implementation for some commonly used functions in economics.

Julia

StanRun.jl

Run Stan samples from Julia.

Julia

FlatViews.jl

Julia package for flat views of nested collections.

Julia

StanDump.jl

Julia library for dumping data to be read by Stan.

Julia

FlexDates.jl

Dates with arbitrary integer types and epochs.

Julia

NonhomotheticCES.jl

Julia package for calculations with non-homothetic preferences.

Julia

extended-reals

Extended real numbers for Common Lisp

Common Lisp

StochasticDurations.jl

Julia library for working with continuous time simulations.

Julia

Squeezing.jl

Convenient syntax for removing singleton dimensions from array reductions.

Julia

AlgebraResultTypes.jl

result type calculations for algebraic operations

Julia

PkgBugDemo.jl

self-contained repo for demonstrating a bug

Julia

MCMCSamples.jl

Julia package that defines a container format for Markov Chain Monte Carlo samples

Julia

TKPappKitchenSink.jl

Code that I use, but did not move into its own library (yet).

Julia

StanRun-OLD.jl

Julia library for running Stan.

Julia

tpapp.github.io

personal website

HTML

MultiBroadcast.jl

Utilities for broadcasting functions with multiple values in Julia

Julia

cl-print-debug

Common Lisp debug library using print statements

Common Lisp

IndirectLikelihood.jl

Framework for indirect likelihood estimation.

Julia

unicode-math-input

Emacs input method for entering unicode math symbols with LaTeX macros.

Emacs Lisp

MCMC_LR_Tests.jl

Likelihood ratio test for comparing MCMC sample means to a known value.

Julia

consistent-local-continuous

Continuous-time demonstration of the "Exact Present Solution" method in Julia

Julia

IndentWrappers.jl

Wrapper type for indentation management for plain text printing.

Julia

BinaryFileVectors.jl

Julia package for collecting and mapping vectors of binary data on disk.

Julia

HiddenPoisson.jl

Simulate a hidden state model in continuous time with Poisson shocks.

Julia

borgmatic-config-hardcopy

Print borgmatic configuration and ssh key as a hardcopy (also as QR code)

Shell

univariate-decompositions

Decomposing deviations from a trend.

Common Lisp

buffer-unique-id

Generating strings that are unique in an Emacs buffer.

Emacs Lisp

RaggedData.jl

Library for collating and indexing ragged data.

Julia

ESS-julia-extensions

Emacs Lisp

PackedASCIITypes.jl

Julia package for short ASCII strings

Julia

HDF5Logging.jl

Log to HDF5 files from Julia.

Julia

ColumnSummaries.jl

Simple summaries of raw data before parsing and analysis

Julia

AMDB.jl

AMDB analysis. For internal use at the IHS until cleaned up.

Julia

NestedViews.jl

Lazy combination and splitting of arrays.

Julia

SEDF.jl

Specification and Julia implementation of the Simple Externalized Data Format

Julia

TextTableRows.jl

Julia library for parsing recalcitrant data in text format.

Julia

DOIHS.jl

Dynamic Optimization 2 course at the Institute for Advanced Studies, Vienna.

Julia

AMDB_old.jl

Old code for working with the AMDB. Now outdated, see AMDB.jl

Julia

100

SerializeTables.jl

An experiment with serializing and compressing tables.

Julia

tpapp/HamiltonianABC.jl

tpapp

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