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lens
A novel way of seeing contentsciencebeam-parser
A set of tools to allow PDF to XML conversion, utilising Apache Beam and other tools. The aim of this project is to bring multiple tools together to generate a full XML document.elife-xpub
eLife is an open-access journal and technology provider that publishes promising research in the life and biomedical sciences. This is their implementation of a submission and peer review system based on Coko PubSweet and xPub.datacapsule-crossref
Retrieve and extract citations from Crossref datasciencebeam-gym
ScienceBeam Gymelife-article-xml
Full XML of all eLife articles including each revision.elife-bot
tools for creating an automatic publishing workflow.journal
eLife is an open-access journal that publishes promising research in the life and biomedical scienceselife-tools
Tools for using article data in Pythonelife-continuum-documentation
ppp project related files and prototypeslens-browser
Lens Article Browserlens-converter
A client-side NLM to Lens converter. Based on Substance.Converter.elife-articles
xml of elife articlesrefract
Convert NLM XML files into the Lens JSONbuilder
elife-jenkins-workflow-libs
Common steps used in eLife's Jenkins Pipelinescitation-context
lens-indexer
Lens Indexer based on ElasticSearch.rds-example
Stand-alone example of a reproducible document stack articleapi-raml
RAML for the eLife Sciences APIpattern-library
Pattern library driving https://elifesciences.org, the eLife journal.reference-schematron
sciencebeam-trainer-delft
Wrapper around https://github.com/kermitt2/delftsciencebeam-airflow
Airflow pipeline for ScienceBeam related training and evaluationjats-scraper
standalone article xml scraper for the pppp projectelife-crossref-xml-generation
Crossref deposit of journal articleslax
lens-reader
The Lens Reader as a module, for custom app integrationbasex-validator-docker
XML Validation service built on BaseX for validating XML against elife's schematron fileslens-elife
eLife integrations of Lens with custom extensions as well as official bundlepublisher-xml-fragment-examples
isolated-drupal-behat-extension
Extension for Behat that tests Drupal sites in isolation.lens-outline
Visually outlines Substance documents.search
journal-cms
jats-generator
JATS XML generatorjats-xml-to-pdf
peerscout
PeerScout® is a web application and machine learning trained API for suggesting peer reviewers from an existing pool, based on attributes of the papers they have reviewed and writtenbot-lax-adaptor
XML-mapping
Mapping the XML to new Continuum requirements and build of a new Kitchen sinkeLife-JATS-schematron
Schematron for all JATS eLife contentelife-pdfs
pdf versions of elife articlesthreadbare
A partial replacement for eLife's usage of Fabric 1.x and Paramiko.cermine-docker
data-science-peertax
Data Science project looking into the Peer Review Taxonomyelife-flux-cluster
Definition of eLife's k8s cluster and deployments to it. Automatically applied via Flux.medium
eLife Medium articles APIapi-dummy
Dummy implementation of the eLife Sciences APIlens-sandbox
Lens Development Environmentelife-article-scheduler
manage scheduling future publications for eLife Continuumbus-sdk-php
PHP SDK for the eLife Sciences bus [in development]elife-metrics
schematron-wiki
This contains the markdown from gitbook for schematron.lens-starter
Minimal Lens integration, use as a starting point for developmentelife-api
data-hub-ejp-xml-pipeline
Data pipeline for loading eJP Xml files from S3 bucket into Bigquerydata-science-dags
sciencebeam-utils
ScienceBeam Utilspeerscout-dags
citation-sentiment-analysis
elife-data-hub-utils
Utility functions related to elife-data-hubdata-hub-airflow-image
create custom airflow image used for running data-hub pipelineenhanced-preprints-client
Enhanced Preprints client applicationdata-hub-core-airflow-dags
builder-configuration
Contains non-sensitive Salt formulas configurationpatterns-php
PHP implementation of the eLife patternsdata-pipeline-sql-prototype
A central place for resources relating to the eLife Data Pipeline toolsbigquery-views-manager
BigQuery Views Managerpacker-test
files for testing packerelife-drupal-cookbook
elife version of drupal cookbookpopulate-elife-api
scripts for getting elife xml, parsing them, and populating our REST apideveloper-resources
Are you a developer or hacker interested in using eLife's open-source resources? This page is for you! If you do build something using our code, we'd love to hear at [email protected] (we may be able to help you grow your project).elife-alfred-formula
JATs-xml
eLife upgrade to JATS xmlapi-gateway-formula
elife-dashboard
publishing dashboard for eLife Continuumenhanced-preprints-import
Enhanced Preprints import systemelife-kickstart
Build script to make it easier to start building a distribution for a new Drupal project.sciencebeam-editor
eif-article-json
elife-data-hub-charts
api-client-php
PHP client for the eLife Sciences APIjournal-cms-formula
citerank
Calculates PageRank over citation databuilder-base-formula
lens-library
Library of eLife Articles, used as a landing page at lens.elifesciences.orgelife-metrics-formula
elife-flux-test
Declares the deploys to kubernetes-aws--flux-test cluster using fluxcdlens-s3
elife-article-xml-continuumtest
Testing repository. Contents may be DELETED at any time.data-hub-api
Data Hup APIselife-utility-scripts
a collection of utility scripts used at eLifeapi-sdk-php
PHP SDK for the eLife Sciences APIelife-crossref-feed
code to support uploading info to crossref on PAW articlespubpub-css
To enable version control of the CSS in PubPub's static page systemelife-website
sciencebeam-trainer-grobid
ScienceBeam Trainer for GROBIDhypothesis-dummy
Minimal dummy to stand in for Hypothes.is inside eLife's testing infrastructurebioprotocol-service
master-server-formula
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