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eLife Sciences Publications Ltd (@elifesciences)

elifesciences

Stars
1,084
Global Org. Rank 14,522 (Top 5 %)
Registered over 12 years ago
Most used languages

Python
35.6 %

JavaScript
17.8 %

PHP
13.9 %

Shell
6.9 %

SaltStack 6.9 %

Jupyter Notebook
4.0 %

TypeScript
3.0 %

XSLT 2.0 %

HTML
2.0 %

Makefile 1.0 %

Smarty 1.0 %

XQuery 1.0 %

Ruby
1.0 %

Clojure
1.0 %

RAML 1.0 %

CSS
1.0 %

Groovy
1.0 %
Location 🇬🇧 United Kingdom
Country Total Rank 1,397
Country Ranking

RAML 3

SaltStack 4

XQuery 16

XSLT 43

Groovy
85

Smarty 111

Clojure
490

Makefile 496

JavaScript
497

Python
522

Jupyter Notebook
566

PHP
793

HTML
1,289

Shell
1,327

Ruby
2,876

TypeScript
3,187

CSS
4,509

lens

A novel way of seeing content

sciencebeam-parser

A set of tools to allow PDF to XML conversion, utilising Apache Beam and other tools. The aim of this project is to bring multiple tools together to generate a full XML document.

elife-xpub

eLife is an open-access journal and technology provider that publishes promising research in the life and biomedical sciences. This is their implementation of a submission and peer review system based on Coko PubSweet and xPub.

datacapsule-crossref

Retrieve and extract citations from Crossref data

Jupyter Notebook

sciencebeam-gym

ScienceBeam Gym

elife-article-xml

Full XML of all eLife articles including each revision.

elife-bot

tools for creating an automatic publishing workflow.

journal

eLife is an open-access journal that publishes promising research in the life and biomedical sciences

elife-tools

Tools for using article data in Python

elife-continuum-documentation

ppp project related files and prototypes

lens-browser

Lens Article Browser

lens-converter

A client-side NLM to Lens converter. Based on Substance.Converter.

elife-articles

xml of elife articles

refract

Convert NLM XML files into the Lens JSON

builder

elife-jenkins-workflow-libs

Common steps used in eLife's Jenkins Pipelines

citation-context

Jupyter Notebook

lens-indexer

Lens Indexer based on ElasticSearch.

rds-example

Stand-alone example of a reproducible document stack article

api-raml

RAML for the eLife Sciences API

pattern-library

Pattern library driving https://elifesciences.org, the eLife journal.

reference-schematron

sciencebeam-trainer-delft

Wrapper around https://github.com/kermitt2/delft

proofreader-php

proofreader-php is a tool for enforcing opinionated coding standards and conventions through static analysis of the code.

sciencebeam-airflow

Airflow pipeline for ScienceBeam related training and evaluation

jats-scraper

standalone article xml scraper for the pppp project

elife-crossref-xml-generation

Crossref deposit of journal articles

lax

lens-reader

The Lens Reader as a module, for custom app integration

basex-validator-docker

XML Validation service built on BaseX for validating XML against elife's schematron files

lens-elife

eLife integrations of Lens with custom extensions as well as official bundle

publisher-xml-fragment-examples

isolated-drupal-behat-extension

Extension for Behat that tests Drupal sites in isolation.

lens-outline

Visually outlines Substance documents.

search

journal-cms

jats-generator

JATS XML generator

jats-xml-to-pdf

peerscout

PeerScout® is a web application and machine learning trained API for suggesting peer reviewers from an existing pool, based on attributes of the papers they have reviewed and written

bot-lax-adaptor

XML-mapping

Mapping the XML to new Continuum requirements and build of a new Kitchen sink

eLife-JATS-schematron

Schematron for all JATS eLife content

elife-pdfs

pdf versions of elife articles

threadbare

A partial replacement for eLife's usage of Fabric 1.x and Paramiko.

cermine-docker

data-science-peertax

Data Science project looking into the Peer Review Taxonomy

Jupyter Notebook

elife-flux-cluster

Definition of eLife's k8s cluster and deployments to it. Automatically applied via Flux.

medium

eLife Medium articles API

api-dummy

Dummy implementation of the eLife Sciences API

lens-sandbox

Lens Development Environment

elife-article-scheduler

manage scheduling future publications for eLife Continuum

bus-sdk-php

PHP SDK for the eLife Sciences bus [in development]

elife-metrics

schematron-wiki

This contains the markdown from gitbook for schematron.

lens-starter

Minimal Lens integration, use as a starting point for development

elife-api

data-hub-ejp-xml-pipeline

Data pipeline for loading eJP Xml files from S3 bucket into Bigquery

data-science-dags

sciencebeam-utils

ScienceBeam Utils

peerscout-dags

citation-sentiment-analysis

Jupyter Notebook

elife-data-hub-utils

Utility functions related to elife-data-hub

data-hub-airflow-image

create custom airflow image used for running data-hub pipeline

enhanced-preprints-client

Enhanced Preprints client application

data-hub-core-airflow-dags

builder-configuration

Contains non-sensitive Salt formulas configuration

patterns-php

PHP implementation of the eLife patterns

data-pipeline-sql-prototype

A central place for resources relating to the eLife Data Pipeline tools

bigquery-views-manager

BigQuery Views Manager

packer-test

files for testing packer

elife-drupal-cookbook

elife version of drupal cookbook

populate-elife-api

scripts for getting elife xml, parsing them, and populating our REST api

developer-resources

Are you a developer or hacker interested in using eLife's open-source resources? This page is for you! If you do build something using our code, we'd love to hear at [email protected] (we may be able to help you grow your project).

elife-alfred-formula

JATs-xml

eLife upgrade to JATS xml

api-gateway-formula

elife-dashboard

publishing dashboard for eLife Continuum

enhanced-preprints-import

Enhanced Preprints import system

elife-kickstart

Build script to make it easier to start building a distribution for a new Drupal project.

sciencebeam-editor

eif-article-json

elife-data-hub-charts

api-client-php

PHP client for the eLife Sciences API

journal-cms-formula

citerank

Calculates PageRank over citation data

builder-base-formula

lens-library

Library of eLife Articles, used as a landing page at lens.elifesciences.org

elife-metrics-formula

elife-flux-test

Declares the deploys to kubernetes-aws--flux-test cluster using fluxcd

lens-s3

elife-article-xml-continuumtest

Testing repository. Contents may be DELETED at any time.

data-hub-api

elife-utility-scripts

a collection of utility scripts used at eLife

api-sdk-php

PHP SDK for the eLife Sciences API

elife-crossref-feed

code to support uploading info to crossref on PAW articles

pubpub-css

To enable version control of the CSS in PubPub's static page system

elife-website

sciencebeam-trainer-grobid

ScienceBeam Trainer for GROBID

hypothesis-dummy

Minimal dummy to stand in for Hypothes.is inside eLife's testing infrastructure

bioprotocol-service