clauswilke/structural_prediction_of_ER

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Created over 11 years ago
Updated about 10 years ago

clauswilke/structural_prediction_of_ER

clauswilke

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Code and data for Shahmoradi et al., Predicting evolutionary site variability from structure in viral proteins: buriedness, packing, flexibility, and design, J. Mol. Evol. 79:130–142 (2014).

dataviz

A book covering the fundamentals of data visualization

colorblindr

An R package to simulate colorblindness on R figures.

ggjoy

Deprecated. Please use ggridges.

practical_ggplot2

Step-by-step examples of building publication-quality figures in ggplot2

ggtextures

Drawing textured rectangles and bars with ggplot

multiscales

Multivariate scales for ggplot2

dviz.supp

Supporting materials for Claus Wilke's data visualization book

PeptideBuilder

A simple Python library to generate model peptides

relayer

Rethinking layers in ggplot2

ggisoband

Drawing isolines and isobands with 'ggplot2'

sinab

Sinab is not a browser.

COVID19-IFR

COVID-19 Infection Fatality Rates

proteinER

Supporting code for the paper "Measuring evolutionary rates of proteins in a structural context"

pinetree

🌲 a flexible gene expression simulator with codon-specific translation rates

artifact

Complete code for generative art project The Artifact.

sneronoi

Stochastic neighbor embedding meets Voronoi tessellation.

codon_tools

A python package containing various tools for codon optimization and de-optimization.

Ecoli_FBA_input_prediction

Code and data for Sridhara et al., Predicting growth conditions from internal metabolic fluxes in an in-silico model of E. coli, PLOS ONE 9:e114608 (2014).

protein_design_and_site_variability

Code and data for Jackson et al, Amino-acid site variability among natural and designed proteins, PeerJ 1:e211 (2013).

fxrandomjs

Deterministic pseudorandom number generator

GBM_genomics

clauswilke.github.io.old

zipcodes

Translate zip codes into fips codes

clauswilke.github.io

MACV_SMD

Code and data for Meyer et al, Analyzing Machupo virus-receptor binding by molecular dynamics simulations, PeerJ 2:e266 (2014).

alien_clock

Omega_MutSel

Code and data for Spielman and Wilke, The relationship between dN/dS and scaled selection coefficients, Mol. Biol. Evol. 2015.

Guo_etal_SCV

Data and code for Guo et al., Single-cell virology